Wall clock time and date at job start Tue Mar 31 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.50697 * 109.46961 * 120.00188 * 2 1 3 5 5 O 1.20827 * 119.99944 * 120.00577 * 4 2 1 6 6 O 1.34229 * 120.00242 * 299.99694 * 4 2 1 7 7 N 1.46499 * 109.47591 * 240.00396 * 2 1 3 8 8 C 1.46502 * 119.99595 * 300.00045 * 7 2 1 9 9 C 1.34775 * 120.00313 * 119.99612 * 7 2 1 10 10 O 1.21754 * 119.99798 * 0.17618 * 9 7 2 11 11 C 1.46237 * 119.99919 * 179.89971 * 9 7 2 12 12 S 1.75674 * 125.22731 * 350.70623 * 11 9 7 13 13 C 1.75471 * 92.08811 * 180.02562 * 12 11 9 14 14 C 1.32762 * 111.36920 * 0.02562 * 13 12 11 15 15 C 1.39550 * 125.22939 * 170.40631 * 11 9 7 16 16 C 1.40539 * 123.71119 * 359.97438 * 15 11 9 17 17 H 1.07996 * 120.00110 * 25.55202 * 16 15 11 18 18 C 1.40302 * 119.99563 * 205.56175 * 16 15 11 19 19 N 1.30640 * 120.00175 * 358.28937 * 18 16 15 20 20 Si 1.86807 * 119.99942 * 178.29148 * 18 16 15 21 21 H 1.48504 * 109.46889 * 90.00016 * 20 18 16 22 22 H 1.48504 * 109.47078 * 209.99873 * 20 18 16 23 23 H 1.48500 * 109.47001 * 329.99957 * 20 18 16 24 24 H 1.09004 * 109.46834 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47192 * 299.99812 * 1 2 3 27 27 H 0.96698 * 117.00371 * 179.97438 * 6 4 2 28 28 H 1.08996 * 109.47397 * 263.53361 * 8 7 2 29 29 H 1.09003 * 109.47159 * 23.53474 * 8 7 2 30 30 H 1.09002 * 109.47385 * 143.53309 * 8 7 2 31 31 H 1.08002 * 124.31584 * 179.97438 * 13 12 11 32 32 H 1.08003 * 122.79027 * 179.97438 * 14 13 12 33 33 H 0.97002 * 120.00196 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1195 6 8 1.7080 -0.2519 2.4496 7 7 2.0184 -0.6905 -1.1962 8 6 1.6645 -2.0931 -1.4280 9 6 2.7932 -0.0355 -2.0833 10 8 3.0899 1.1293 -1.8890 11 6 3.2826 -0.7254 -3.2762 12 16 3.1443 -2.4507 -3.5773 13 6 3.9557 -2.3104 -5.1268 14 6 4.2981 -1.0532 -5.3815 15 6 3.9258 -0.1137 -4.3530 16 6 4.1866 1.2654 -4.4247 17 1 4.2800 1.8451 -3.5183 18 6 4.3253 1.8890 -5.6738 19 7 4.2453 1.1820 -6.7694 20 14 4.6243 3.7305 -5.7703 21 1 6.0853 3.9962 -5.7534 22 1 4.0391 4.2618 -7.0275 23 1 3.9864 4.3972 -4.6068 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.0534 -0.7411 3.2088 28 1 2.4711 -2.7348 -1.0735 29 1 0.7476 -2.3304 -0.8886 30 1 1.5114 -2.2577 -2.4946 31 1 4.1523 -3.1410 -5.7885 32 1 4.8085 -0.7579 -6.2863 33 1 4.3408 1.6132 -7.6330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000901451839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:18 Heat of formation + Delta-G solvation = -94.856084 kcal Electronic energy + Delta-G solvation = -20269.653729 eV Core-core repulsion = 17001.241271 eV Total energy + Delta-G solvation = -3268.412458 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36367 -38.51284 -36.32136 -35.87577 -34.79039 -33.02688 -31.50921 -28.82840 -26.49661 -26.22574 -24.57592 -22.46244 -21.04977 -19.36290 -18.59650 -18.00248 -17.05707 -16.41277 -16.24952 -15.47714 -15.38299 -14.92057 -14.25845 -14.06875 -13.70341 -13.32604 -12.60641 -12.42230 -12.30706 -12.30469 -12.08097 -11.94302 -11.75274 -11.46211 -11.40576 -11.24432 -11.03523 -10.89285 -10.32365 -10.28420 -10.06098 -9.51640 -9.06666 -8.54959 -8.10880 -7.47052 -7.06298 -6.97463 -4.55196 2.14265 2.34940 2.94451 2.98778 2.99598 3.09103 3.24710 3.61328 3.73985 3.84758 3.86037 4.37253 5.03261 5.18039 5.25449 5.34960 5.55293 5.73886 5.80674 6.06870 6.12364 6.21807 6.35257 6.43712 6.58329 6.82457 7.09199 7.25910 7.28579 7.53876 7.71532 8.01949 8.20134 8.39520 8.59334 8.72566 9.40350 9.87437 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.006116 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.128054 B = 4576.883443 C = 5637.026526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.136 0.864 4 C 0.465 3.535 5 O -0.503 6.503 6 O -0.519 6.519 7 N -0.615 5.615 8 C 0.076 3.924 9 C 0.605 3.395 10 O -0.562 6.562 11 C -0.430 4.430 12 S -0.015 6.015 13 C -0.234 4.234 14 C -0.104 4.104 15 C 0.144 3.856 16 C -0.380 4.380 17 H 0.111 0.889 18 C 0.067 3.933 19 N -0.782 5.782 20 Si 0.927 3.073 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.254 1.254 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.404 0.596 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 -2.512 7.474 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.153 0.847 4 C 0.305 3.695 5 O -0.390 6.390 6 O -0.330 6.330 7 N -0.350 5.350 8 C -0.070 4.070 9 C 0.405 3.595 10 O -0.445 6.445 11 C -0.548 4.548 12 S 0.241 5.759 13 C -0.367 4.367 14 C -0.135 4.135 15 C 0.132 3.868 16 C -0.411 4.411 17 H 0.129 0.871 18 C -0.154 4.154 19 N -0.407 5.407 20 Si 0.750 3.250 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.177 1.177 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.150 0.850 32 H 0.167 0.833 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.017 -3.155 7.673 10.249 hybrid contribution 0.973 1.181 -0.496 1.609 sum -5.044 -1.974 7.177 8.991 Atomic orbital electron populations 1.22080 0.92312 1.02919 1.03813 1.20280 0.95492 0.98659 0.80770 0.84661 1.24441 0.77253 0.82944 0.84876 1.90710 1.35181 1.26109 1.86978 1.84558 1.72458 1.59204 1.16793 1.47399 1.54250 1.12675 1.20700 1.21899 1.00185 0.82010 1.02871 1.16951 0.76186 0.85174 0.81162 1.90640 1.60240 1.17015 1.76563 1.22505 1.32358 0.93641 1.06296 1.83246 1.65592 1.09996 1.17035 1.25546 1.07943 1.00399 1.02769 1.21891 1.00257 0.90969 1.00424 1.17962 0.87054 0.93523 0.88221 1.20061 1.33786 0.93221 0.94000 0.87140 1.26400 0.91534 1.02402 0.95104 1.69624 1.32983 1.38604 0.99465 0.85975 0.79675 0.80230 0.79126 1.18935 1.19932 1.17699 0.90383 0.92063 0.90555 0.73781 0.91900 0.92035 0.88942 0.84962 0.83284 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.12 37.16 0.34 -1.58 16 2 C 0.15 2.56 3.15 -69.09 -0.22 2.34 16 3 H 0.14 2.39 6.90 -51.93 -0.36 2.03 16 4 C 0.46 7.24 7.52 36.00 0.27 7.51 16 5 O -0.50 -9.38 15.66 -18.75 -0.29 -9.67 16 6 O -0.52 -5.97 13.33 -39.25 -0.52 -6.50 16 7 N -0.61 -12.33 2.54 -176.97 -0.45 -12.77 16 8 C 0.08 1.35 7.50 59.85 0.45 1.80 16 9 C 0.61 14.95 7.60 -13.05 -0.10 14.85 16 10 O -0.56 -15.09 13.83 5.14 0.07 -15.02 16 11 C -0.43 -10.97 6.29 -35.88 -0.23 -11.19 16 12 S -0.02 -0.33 17.98 -107.50 -1.93 -2.26 16 13 C -0.23 -5.18 11.07 28.86 0.32 -4.86 16 14 C -0.10 -2.57 9.09 -39.12 -0.36 -2.92 16 15 C 0.14 3.86 5.70 -106.21 -0.61 3.26 16 16 C -0.38 -10.24 8.57 -37.94 -0.32 -10.56 16 17 H 0.11 3.11 6.00 -52.49 -0.32 2.80 16 18 C 0.07 1.63 5.47 -17.28 -0.09 1.53 16 19 N -0.78 -18.83 10.54 55.57 0.59 -18.24 16 20 Si 0.93 18.55 29.56 -169.99 -5.03 13.53 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.25 -5.24 7.11 56.52 0.40 -4.84 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.71 6.67 -51.93 -0.35 0.36 16 26 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 27 H 0.40 2.87 9.10 45.56 0.41 3.28 16 28 H 0.06 1.19 7.11 -51.93 -0.37 0.82 16 29 H 0.06 0.90 6.45 -51.93 -0.33 0.56 16 30 H 0.09 1.74 4.65 -23.33 -0.11 1.63 16 31 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 32 H 0.15 3.69 6.14 -52.48 -0.32 3.37 16 33 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 LS Contribution 291.45 15.07 4.39 4.39 Total: -1.00 -31.20 291.45 -5.86 -37.06 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.14 Total: 9.32 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -0.55 Total: 0.16 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.14 Total: -31.02 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.75 Total: -31.19 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.93 Total: -2.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.20 -5.86 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901451839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.794 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds