Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.50697 * 109.46961 * 120.00188 * 2 1 3 5 5 O 1.20827 * 119.99944 * 120.00577 * 4 2 1 6 6 O 1.34229 * 120.00242 * 299.99694 * 4 2 1 7 7 N 1.46499 * 109.47591 * 240.00396 * 2 1 3 8 8 C 1.46502 * 119.99595 * 300.00045 * 7 2 1 9 9 C 1.34775 * 120.00313 * 119.99612 * 7 2 1 10 10 O 1.21754 * 119.99798 * 0.17618 * 9 7 2 11 11 C 1.46237 * 119.99919 * 179.89971 * 9 7 2 12 12 S 1.75674 * 125.22731 * 350.70623 * 11 9 7 13 13 C 1.75471 * 92.08811 * 180.02562 * 12 11 9 14 14 C 1.32762 * 111.36920 * 0.02562 * 13 12 11 15 15 C 1.39550 * 125.22939 * 170.40631 * 11 9 7 16 16 C 1.40539 * 123.71119 * 359.97438 * 15 11 9 17 17 H 1.07996 * 120.00110 * 25.55202 * 16 15 11 18 18 C 1.40302 * 119.99563 * 205.56175 * 16 15 11 19 19 N 1.30640 * 120.00175 * 358.28937 * 18 16 15 20 20 Si 1.86807 * 119.99942 * 178.29148 * 18 16 15 21 21 H 1.48504 * 109.46889 * 90.00016 * 20 18 16 22 22 H 1.48504 * 109.47078 * 209.99873 * 20 18 16 23 23 H 1.48500 * 109.47001 * 329.99957 * 20 18 16 24 24 H 1.09004 * 109.46834 * 59.99876 * 1 2 3 25 25 H 1.08997 * 109.46910 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47192 * 299.99812 * 1 2 3 27 27 H 0.96698 * 117.00371 * 179.97438 * 6 4 2 28 28 H 1.08996 * 109.47397 * 263.53361 * 8 7 2 29 29 H 1.09003 * 109.47159 * 23.53474 * 8 7 2 30 30 H 1.09002 * 109.47385 * 143.53309 * 8 7 2 31 31 H 1.08002 * 124.31584 * 179.97438 * 13 12 11 32 32 H 1.08003 * 122.79027 * 179.97438 * 14 13 12 33 33 H 0.97002 * 120.00196 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1195 6 8 1.7080 -0.2519 2.4496 7 7 2.0184 -0.6905 -1.1962 8 6 1.6645 -2.0931 -1.4280 9 6 2.7932 -0.0355 -2.0833 10 8 3.0899 1.1293 -1.8890 11 6 3.2826 -0.7254 -3.2762 12 16 3.1443 -2.4507 -3.5773 13 6 3.9557 -2.3104 -5.1268 14 6 4.2981 -1.0532 -5.3815 15 6 3.9258 -0.1137 -4.3530 16 6 4.1866 1.2654 -4.4247 17 1 4.2800 1.8451 -3.5183 18 6 4.3253 1.8890 -5.6738 19 7 4.2453 1.1820 -6.7694 20 14 4.6243 3.7305 -5.7703 21 1 6.0853 3.9962 -5.7534 22 1 4.0391 4.2618 -7.0275 23 1 3.9864 4.3972 -4.6068 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.0534 -0.7411 3.2088 28 1 2.4711 -2.7348 -1.0735 29 1 0.7476 -2.3304 -0.8886 30 1 1.5114 -2.2577 -2.4946 31 1 4.1523 -3.1410 -5.7885 32 1 4.8085 -0.7579 -6.2863 33 1 4.3408 1.6132 -7.6330 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901451839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -116.230040 kcal Electronic energy + Delta-G solvation = -20270.580573 eV Core-core repulsion = 17001.241271 eV Total energy + Delta-G solvation = -3269.339303 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67515 -40.16243 -38.01835 -37.18465 -36.43216 -34.87540 -32.90273 -30.64243 -28.11971 -27.88096 -25.86144 -24.16878 -22.60711 -20.94496 -20.41818 -19.29269 -18.59472 -18.07582 -17.76676 -17.14457 -16.83109 -16.45368 -15.85790 -15.63794 -15.38791 -14.49210 -14.18899 -14.10748 -14.00447 -13.79321 -13.62159 -13.46059 -13.22049 -13.04971 -12.81632 -12.67638 -12.60066 -12.44814 -12.03092 -11.88320 -11.58102 -11.28616 -10.81922 -10.45313 -9.74478 -9.32858 -8.86767 -8.77518 -6.46562 0.29439 1.11494 1.34040 1.35982 1.44443 1.49074 1.73201 1.77238 2.01360 2.17557 2.29742 2.56697 3.29494 3.82646 3.99500 4.12939 4.29777 4.37939 4.57495 4.66830 4.73662 4.83086 4.92925 4.99850 5.18286 5.35156 5.43197 5.49418 5.60517 5.69183 5.86256 6.35332 6.50193 6.66868 6.82537 6.95395 7.55800 8.09354 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019411 B = 0.006116 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.128054 B = 4576.883443 C = 5637.026526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.143 3.857 3 H 0.118 0.882 4 C 0.477 3.523 5 O -0.538 6.538 6 O -0.501 6.501 7 N -0.612 5.612 8 C 0.078 3.922 9 C 0.595 3.405 10 O -0.598 6.598 11 C -0.467 4.467 12 S 0.049 5.951 13 C -0.225 4.225 14 C -0.135 4.135 15 C 0.114 3.886 16 C -0.419 4.419 17 H 0.084 0.916 18 C 0.035 3.965 19 N -0.797 5.797 20 Si 0.991 3.009 21 H -0.253 1.253 22 H -0.253 1.253 23 H -0.271 1.271 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.428 0.572 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.143 0.857 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 -3.289 8.142 11.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.136 0.864 4 C 0.319 3.681 5 O -0.427 6.427 6 O -0.314 6.314 7 N -0.346 5.346 8 C -0.067 4.067 9 C 0.394 3.606 10 O -0.484 6.484 11 C -0.586 4.586 12 S 0.306 5.694 13 C -0.358 4.358 14 C -0.166 4.166 15 C 0.103 3.897 16 C -0.450 4.450 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.421 5.421 20 Si 0.811 3.189 21 H -0.177 1.177 22 H -0.176 1.176 23 H -0.195 1.195 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.290 0.710 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.185 0.815 32 H 0.161 0.839 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.282 -3.979 8.388 11.799 hybrid contribution 1.282 1.321 -0.537 1.917 sum -6.000 -2.658 7.852 10.233 Atomic orbital electron populations 1.22053 0.88815 1.04269 1.04895 1.20554 0.98107 0.97453 0.80157 0.86404 1.23987 0.76392 0.82053 0.85691 1.90710 1.36688 1.27675 1.87638 1.84479 1.71786 1.58882 1.16277 1.47326 1.52879 1.13386 1.21040 1.21949 1.01575 0.80500 1.02675 1.17114 0.76636 0.84986 0.81898 1.90600 1.61648 1.18525 1.77585 1.23036 1.32395 0.96564 1.06574 1.82871 1.64285 1.06331 1.15865 1.26056 1.05732 1.00479 1.03542 1.21772 1.02599 0.91712 1.00559 1.18398 0.87531 0.94226 0.89562 1.20037 1.36870 0.93777 0.94361 0.89758 1.27080 0.90900 1.06394 0.94089 1.69615 1.32330 1.40212 0.99992 0.85063 0.80015 0.74782 0.79088 1.17727 1.17627 1.19498 0.91090 0.90471 0.87728 0.70992 0.92826 0.88165 0.89822 0.81471 0.83950 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.12 71.98 0.66 -2.56 16 2 C 0.14 4.59 3.15 44.24 0.14 4.73 16 3 H 0.12 4.23 6.90 -2.39 -0.02 4.21 16 4 C 0.48 13.98 7.52 71.24 0.54 14.51 16 5 O -0.54 -19.27 15.66 21.96 0.34 -18.92 16 6 O -0.50 -10.03 13.33 -51.41 -0.69 -10.71 16 7 N -0.61 -24.41 2.54 -832.00 -2.11 -26.52 16 8 C 0.08 2.64 7.50 127.77 0.96 3.59 16 9 C 0.59 30.26 7.60 86.32 0.66 30.92 16 10 O -0.60 -33.82 13.83 -4.52 -0.06 -33.88 16 11 C -0.47 -24.45 6.29 24.67 0.16 -24.30 16 12 S 0.05 2.06 17.98 -56.49 -1.02 1.05 16 13 C -0.23 -9.74 11.07 66.64 0.74 -9.01 16 14 C -0.13 -6.77 9.09 22.61 0.21 -6.56 16 15 C 0.11 6.38 5.70 -20.89 -0.12 6.26 16 16 C -0.42 -23.81 8.57 23.33 0.20 -23.61 16 17 H 0.08 5.10 6.00 -2.91 -0.02 5.08 16 18 C 0.03 1.74 5.47 85.37 0.47 2.21 16 19 N -0.80 -38.94 10.54 21.89 0.23 -38.71 16 20 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 22 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 24 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 25 H 0.08 1.50 6.67 -2.39 -0.02 1.49 16 26 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 27 H 0.43 4.61 9.10 -74.06 -0.67 3.94 16 28 H 0.05 1.95 7.11 -2.39 -0.02 1.93 16 29 H 0.10 2.62 6.45 -2.39 -0.02 2.60 16 30 H 0.08 3.01 4.65 -20.57 -0.10 2.92 16 31 H 0.17 5.92 8.06 -2.91 -0.02 5.89 16 32 H 0.14 7.22 6.14 -2.91 -0.02 7.21 16 33 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 Total: -1.00 -70.97 291.45 3.74 -67.23 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.42 Total: 23.51 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 4.59 Total: -3.81 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -1.88 Total: -65.24 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -0.40 Total: -63.52 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.02 Total: 1.05 kcal Total: -70.97 3.74 -67.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901451839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.999 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds