Wall clock time and date at job start Tue Mar 31 2020 06:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47297 * 2 1 4 4 H 1.08996 * 109.47430 * 54.99810 * 3 2 1 5 5 N 1.46505 * 109.47162 * 294.99684 * 3 2 1 6 6 C 1.34776 * 119.99699 * 84.99856 * 5 3 2 7 7 O 1.21759 * 120.00069 * 0.02562 * 6 5 3 8 8 C 1.46244 * 119.99774 * 180.02562 * 6 5 3 9 9 S 1.75669 * 125.22851 * 0.02562 * 8 6 5 10 10 C 1.75476 * 92.08931 * 179.97438 * 9 8 6 11 11 C 1.32766 * 111.36355 * 359.97438 * 10 9 8 12 12 C 1.39546 * 125.22503 * 179.72465 * 8 6 5 13 13 C 1.40537 * 123.71591 * 359.97438 * 12 8 6 14 14 H 1.08001 * 120.00193 * 23.46537 * 13 12 8 15 15 C 1.40304 * 119.99903 * 203.45772 * 13 12 8 16 16 N 1.30639 * 120.00327 * 9.79670 * 15 13 12 17 17 Si 1.86800 * 119.99836 * 189.80286 * 15 13 12 18 18 H 1.48510 * 109.47441 * 59.99978 * 17 15 13 19 19 H 1.48501 * 109.47375 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47152 * 300.00032 * 17 15 13 21 21 C 1.50705 * 109.47266 * 175.00035 * 3 2 1 22 22 O 1.20824 * 120.00113 * 119.99792 * 21 3 2 23 23 O 1.34224 * 119.99917 * 300.00045 * 21 3 2 24 24 H 1.08999 * 109.47177 * 60.00002 * 1 2 3 25 25 H 1.08994 * 109.47351 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47024 * 300.00473 * 1 2 3 27 27 H 1.09005 * 109.47024 * 239.99527 * 2 1 3 28 28 H 1.08999 * 109.47177 * 119.99998 * 2 1 3 29 29 H 0.97001 * 120.00204 * 265.00349 * 5 3 2 30 30 H 1.07996 * 124.31414 * 179.97438 * 10 9 8 31 31 H 1.08001 * 122.78242 * 180.02562 * 11 10 9 32 32 H 0.96995 * 120.00274 * 179.97438 * 16 15 13 33 33 H 0.96696 * 117.00333 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 7 1.6525 2.0974 -1.2519 6 6 0.4352 2.6643 -1.3670 7 8 -0.3422 2.6325 -0.4305 8 6 0.0482 3.3177 -2.6169 9 16 1.0571 3.4430 -4.0495 10 6 -0.1858 4.3176 -4.9267 11 6 -1.2710 4.4924 -4.1822 12 6 -1.1815 3.9322 -2.8567 13 6 -2.2178 3.9994 -1.9097 14 1 -1.9927 3.9210 -0.8564 15 6 -3.5448 4.1685 -2.3328 16 7 -3.8434 4.0722 -3.6010 17 14 -4.8845 4.5316 -1.0828 18 1 -4.5700 5.7979 -0.3736 19 1 -6.1888 4.6662 -1.7799 20 1 -4.9599 3.4200 -0.1010 21 6 3.5420 1.4442 0.1238 22 8 4.2192 1.9415 -0.7445 23 8 4.1274 0.8933 1.1987 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2720 2.1230 -1.9979 30 1 -0.0811 4.6689 -5.9426 31 1 -2.1494 5.0083 -4.5410 32 1 -4.7609 4.1887 -3.8934 33 1 5.0934 0.9181 1.2335 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000901703908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:44 Heat of formation + Delta-G solvation = -134.034129 kcal Electronic energy + Delta-G solvation = -20066.587796 eV Core-core repulsion = 16796.476450 eV Total energy + Delta-G solvation = -3270.111346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69345 -40.12349 -37.98802 -37.22656 -36.17875 -34.89904 -33.25631 -30.81088 -29.26103 -27.60481 -24.17142 -23.59224 -22.47241 -21.35429 -20.63971 -19.80140 -18.97834 -17.76952 -17.59635 -17.05980 -17.01020 -16.43850 -15.90039 -15.72081 -15.36965 -14.67498 -14.26061 -14.20204 -13.90440 -13.71643 -13.54213 -13.12069 -13.00628 -12.93793 -12.72952 -12.65582 -12.45162 -12.05801 -12.01949 -11.82030 -11.59593 -11.39909 -11.04453 -10.35911 -9.99370 -9.35364 -8.95037 -8.84589 -6.44606 0.31965 1.01941 1.35979 1.37182 1.39014 1.48153 1.70296 1.81121 1.99796 2.18317 2.51990 2.61542 3.33222 3.82934 3.94607 4.12939 4.34824 4.40969 4.55044 4.83874 4.87225 4.98865 5.02018 5.15834 5.28528 5.39126 5.46176 5.53625 5.56123 5.64039 5.83561 6.40586 6.57269 6.70270 6.85717 6.93488 7.70284 8.08836 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.005933 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.248908 B = 4718.281831 C = 5826.471697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.154 3.846 4 H 0.115 0.885 5 N -0.730 5.730 6 C 0.603 3.397 7 O -0.579 6.579 8 C -0.466 4.466 9 S -0.008 6.008 10 C -0.192 4.192 11 C -0.128 4.128 12 C 0.115 3.885 13 C -0.411 4.411 14 H 0.090 0.910 15 C 0.036 3.964 16 N -0.793 5.793 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.254 1.254 20 H -0.267 1.267 21 C 0.493 3.507 22 O -0.539 6.539 23 O -0.495 6.495 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.400 0.600 30 H 0.175 0.825 31 H 0.142 0.858 32 H 0.301 0.699 33 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -4.905 4.374 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.153 4.153 3 C 0.047 3.953 4 H 0.133 0.867 5 N -0.385 5.385 6 C 0.400 3.600 7 O -0.464 6.464 8 C -0.585 4.585 9 S 0.247 5.753 10 C -0.326 4.326 11 C -0.160 4.160 12 C 0.104 3.896 13 C -0.442 4.442 14 H 0.108 0.892 15 C -0.184 4.184 16 N -0.417 5.417 17 Si 0.809 3.191 18 H -0.182 1.182 19 H -0.177 1.177 20 H -0.191 1.191 21 C 0.335 3.665 22 O -0.429 6.429 23 O -0.308 6.308 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.128 0.872 29 H 0.236 0.764 30 H 0.192 0.808 31 H 0.160 0.840 32 H 0.112 0.888 33 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.601 -5.288 4.249 10.188 hybrid contribution -1.004 0.792 0.101 1.283 sum 6.597 -4.496 4.350 9.091 Atomic orbital electron populations 1.21705 0.95055 1.01057 1.01833 1.21862 0.96725 0.92437 1.04275 1.20421 0.87174 0.97466 0.90219 0.86741 1.45574 1.17052 1.60499 1.15399 1.16730 0.80283 0.76598 0.86366 1.90637 1.52089 1.62747 1.40932 1.22985 1.04031 1.31484 0.99983 1.82600 1.20755 1.64340 1.07569 1.25427 0.97392 1.06010 1.03760 1.21649 0.98257 1.01912 0.94192 1.18340 0.91412 0.87817 0.92077 1.20026 0.91069 1.37098 0.95977 0.89175 1.27059 1.02205 0.90999 0.98137 1.69650 1.23252 1.31302 1.17504 0.85130 0.75897 0.79950 0.78117 1.18172 1.17708 1.19136 1.23201 0.91370 0.73100 0.78835 1.90721 1.65996 1.44011 1.42179 1.84453 1.30821 1.73004 1.42538 0.95150 0.91454 0.93024 0.91109 0.87174 0.76406 0.80805 0.84048 0.88784 0.70389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.51 71.98 0.61 -4.01 16 2 C -0.11 -3.10 5.57 30.59 0.17 -2.93 16 3 C 0.15 4.86 2.77 44.24 0.12 4.98 16 4 H 0.11 3.82 7.58 -2.39 -0.02 3.80 16 5 N -0.73 -28.95 4.90 -450.45 -2.21 -31.16 16 6 C 0.60 29.27 6.33 86.32 0.55 29.82 16 7 O -0.58 -30.31 11.58 -4.54 -0.05 -30.36 16 8 C -0.47 -23.90 6.51 24.67 0.16 -23.74 16 9 S -0.01 -0.35 22.25 -56.49 -1.26 -1.61 16 10 C -0.19 -8.17 11.07 66.64 0.74 -7.43 16 11 C -0.13 -6.23 9.04 22.61 0.20 -6.03 16 12 C 0.11 6.21 5.68 -20.89 -0.12 6.09 16 13 C -0.41 -22.46 8.52 23.33 0.20 -22.26 16 14 H 0.09 5.19 6.03 -2.91 -0.02 5.17 16 15 C 0.04 1.76 5.39 85.37 0.46 2.22 16 16 N -0.79 -37.94 10.82 21.89 0.24 -37.70 16 17 Si 0.99 37.46 29.57 68.60 2.03 39.49 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 20 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 21 C 0.49 13.27 7.69 71.24 0.55 13.82 16 22 O -0.54 -17.73 16.60 21.97 0.36 -17.36 16 23 O -0.49 -8.74 13.23 -51.36 -0.68 -9.42 16 24 H 0.03 1.26 5.64 -2.39 -0.01 1.25 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.80 7.84 -2.38 -0.02 1.78 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.11 2.26 7.99 -2.39 -0.02 2.24 16 29 H 0.40 15.71 6.87 -92.71 -0.64 15.07 16 30 H 0.17 5.97 8.06 -2.91 -0.02 5.95 16 31 H 0.14 6.87 6.40 -2.91 -0.02 6.85 16 32 H 0.30 12.70 8.29 -92.71 -0.77 11.93 16 33 H 0.43 3.44 9.10 -74.06 -0.67 2.76 16 Total: -1.00 -65.46 297.45 1.95 -63.51 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.13 Total: 34.07 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 3.64 Total: -9.47 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -1.97 Total: -68.86 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -0.37 Total: -57.14 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.26 Total: -1.61 kcal Total: -65.46 1.95 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000901703908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.519 kcal (2) G-P(sol) polarization free energy of solvation -65.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds