Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99829 * 2 1 4 4 H 1.48498 * 109.47064 * 270.00180 * 3 2 1 5 5 H 1.48494 * 109.46994 * 30.00616 * 3 2 1 6 6 H 1.48497 * 109.46843 * 150.00251 * 3 2 1 7 7 C 1.38793 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00392 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99920 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46842 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00154 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99671 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00060 * 180.02562 * 13 11 10 15 15 C 1.52989 * 109.47241 * 180.02562 * 14 13 11 16 16 H 1.09004 * 115.56709 * 29.30836 * 15 14 13 17 17 C 1.53000 * 117.50008 * 243.62102 * 15 14 13 18 18 C 1.52997 * 60.00347 * 252.51154 * 17 15 14 19 19 Cl 1.80302 * 117.49615 * 252.51173 * 18 17 15 20 20 Cl 1.80299 * 117.50178 * 107.48433 * 18 17 15 21 21 H 0.97000 * 120.00108 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47195 * 60.00183 * 10 9 7 23 23 H 1.09000 * 109.47163 * 299.99876 * 10 9 7 24 24 H 0.96999 * 120.00402 * 0.02562 * 13 11 10 25 25 H 1.09004 * 109.46923 * 59.99728 * 14 13 11 26 26 H 1.09002 * 109.46898 * 300.00662 * 14 13 11 27 27 H 1.09002 * 117.49696 * 0.02562 * 17 15 14 28 28 H 1.09002 * 117.50343 * 145.02258 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0018 14 6 2.3306 -7.7151 -0.0030 15 6 3.5026 -8.6984 -0.0029 16 1 4.4138 -8.3442 0.4793 17 6 3.6570 -9.6137 -1.2192 18 6 3.1747 -10.1884 0.1142 19 17 4.3250 -11.2237 1.0393 20 17 1.4366 -10.6507 0.2416 21 1 -0.4850 0.8400 0.0004 22 1 3.1245 -3.7313 0.8894 23 1 3.1245 -3.7313 -0.8905 24 1 3.8010 -6.1835 -0.0015 25 1 1.7221 -7.8744 -0.8932 26 1 1.7217 -7.8758 0.8867 27 1 2.9237 -9.5149 -2.0196 28 1 4.6696 -9.8616 -1.5372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915192234.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = -29.256142 kcal Electronic energy + Delta-G solvation = -14840.755106 eV Core-core repulsion = 11877.630495 eV Total energy + Delta-G solvation = -2963.124611 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 282.994 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.49637 -38.31484 -36.42816 -36.07229 -33.93638 -32.44356 -29.82569 -26.58602 -25.44036 -22.79031 -21.45775 -20.39028 -17.92528 -17.26478 -16.43593 -15.60353 -15.28931 -15.18768 -14.81625 -14.00916 -13.84597 -13.39782 -13.21105 -12.96802 -12.57168 -12.32962 -12.02256 -11.78445 -11.57457 -11.27750 -11.07617 -11.04039 -10.80493 -10.78231 -10.27875 -9.83493 -9.46621 -9.08961 -8.98527 -8.25826 -6.52028 -6.23060 -3.93990 0.75638 1.74235 2.60232 3.00008 3.04294 3.21460 3.26262 3.29965 3.55020 3.77401 3.95871 4.18872 4.38828 4.66740 5.03234 5.11227 5.12214 5.23486 5.45020 5.56499 5.76364 5.85705 6.10530 6.47692 7.57788 7.60470 8.33668 8.53577 9.22271 10.84346 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.047409 B = 0.002852 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.457628 B = 9816.636001 C =10206.030067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.514 6.514 13 N -0.738 5.738 14 C 0.148 3.852 15 C -0.129 4.129 16 H 0.136 0.864 17 C -0.137 4.137 18 C 0.003 3.997 19 Cl -0.094 7.094 20 Cl -0.083 7.083 21 H 0.269 0.731 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.400 0.600 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.125 0.875 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -20.971 -1.073 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.393 5.393 14 C 0.023 3.977 15 C -0.148 4.148 16 H 0.154 0.846 17 C -0.175 4.175 18 C -0.049 4.049 19 Cl -0.067 7.067 20 Cl -0.056 7.056 21 H 0.078 0.922 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.234 0.766 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.143 0.857 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.513 -21.324 -0.980 22.981 hybrid contribution 2.444 1.089 0.158 2.681 sum 10.958 -20.235 -0.822 23.026 Atomic orbital electron populations 1.70014 1.05959 1.27487 1.46792 1.24993 0.95029 0.99043 0.94514 0.86163 0.79405 0.81556 0.78349 1.20264 1.20740 1.19701 1.22863 0.94906 0.91622 1.59035 0.90901 1.85425 1.04837 0.96348 1.96729 1.23528 1.06654 0.95148 1.05021 1.20333 0.86480 0.86217 0.75090 1.90721 1.15327 1.85535 1.47187 1.45931 1.10102 1.04898 1.78380 1.20871 0.93102 0.79965 1.03718 1.23448 1.01935 0.88666 1.00767 0.84629 1.24132 1.04740 0.97840 0.90785 1.26733 0.82255 0.93750 1.02161 1.98758 1.60403 1.70953 1.76541 1.98777 1.15204 1.93340 1.98297 0.92159 0.89113 0.89120 0.76626 0.90412 0.90065 0.85675 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.24 15 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 15 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 7 C -0.54 -15.08 9.50 30.94 0.29 -14.79 15 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 15 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 15 10 C -0.15 -2.97 6.16 36.01 0.22 -2.75 15 11 C 0.53 9.51 7.85 -10.98 -0.09 9.43 15 12 O -0.51 -11.40 15.86 5.55 0.09 -11.31 15 13 N -0.74 -8.96 5.56 -60.29 -0.33 -9.29 15 14 C 0.15 1.58 5.04 -4.05 -0.02 1.56 15 15 C -0.13 -0.93 5.69 -90.62 -0.52 -1.45 15 16 H 0.14 0.78 8.04 -51.93 -0.42 0.37 15 17 C -0.14 -0.81 9.86 -26.73 -0.26 -1.07 15 18 C 0.00 0.02 3.62 -26.73 -0.10 -0.07 15 19 Cl -0.09 -0.77 29.29 -51.86 -1.52 -2.28 15 20 Cl -0.08 -0.80 28.23 -51.86 -1.46 -2.26 15 21 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.09 1.62 8.14 -51.92 -0.42 1.20 15 23 H 0.09 1.61 8.14 -51.92 -0.42 1.18 15 24 H 0.40 3.52 8.40 -40.82 -0.34 3.18 15 25 H 0.08 0.89 7.88 -51.93 -0.41 0.48 15 26 H 0.08 1.00 8.02 -51.93 -0.42 0.58 15 27 H 0.13 0.70 8.03 -51.93 -0.42 0.28 15 28 H 0.12 0.51 8.14 -51.93 -0.42 0.09 15 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -33.62 297.72 -8.62 -42.25 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -2.81 Total: -1.52 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.56 Total: -7.16 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.40 Total: -34.54 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -2.98 Total: -4.55 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.62 -8.62 -42.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915192234.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.989 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds