Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99896 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99696 * 3 2 1 7 7 C 1.38798 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00371 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99832 * 359.72198 * 7 2 1 10 10 C 1.81004 * 99.99907 * 180.27629 * 9 7 2 11 11 C 1.50699 * 109.46742 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00732 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99778 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00309 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47359 * 180.02562 * 14 13 11 16 16 H 1.08999 * 115.55520 * 29.32916 * 15 14 13 17 17 C 1.53000 * 117.50079 * 175.00072 * 15 14 13 18 18 C 1.53002 * 60.00229 * 107.48567 * 17 15 14 19 19 Cl 1.80290 * 117.50329 * 252.50969 * 18 17 15 20 20 Cl 1.80307 * 117.49533 * 107.48704 * 18 17 15 21 21 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47255 * 300.00302 * 10 9 7 23 23 H 1.09001 * 109.46783 * 60.00610 * 10 9 7 24 24 H 0.97005 * 120.00069 * 0.02562 * 13 11 10 25 25 H 1.09000 * 109.47102 * 300.00443 * 14 13 11 26 26 H 1.09006 * 109.46942 * 60.00242 * 14 13 11 27 27 H 1.08997 * 117.50158 * 214.97849 * 17 15 14 28 28 H 1.09001 * 117.50006 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0086 10 6 2.5161 -3.8913 0.0147 11 6 1.9876 -5.3026 0.0216 12 8 0.7914 -5.5023 0.0218 13 7 2.8444 -6.3430 0.0264 14 6 2.3307 -7.7150 0.0325 15 6 3.5028 -8.6983 0.0378 16 1 4.4137 -8.3416 0.5184 17 6 3.1749 -10.1876 0.1628 18 6 3.6571 -9.6200 -1.1738 19 17 2.4439 -9.4641 -2.4983 20 17 5.3323 -10.0328 -1.6977 21 1 -0.4850 0.8400 -0.0004 22 1 3.1247 -3.7359 -0.8761 23 1 3.1246 -3.7266 0.9039 24 1 3.8012 -6.1834 0.0259 25 1 1.7219 -7.8710 0.9230 26 1 1.7223 -7.8791 -0.8570 27 1 3.8703 -10.8105 0.7253 28 1 2.1242 -10.4668 0.2408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915192235.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = -28.370350 kcal Electronic energy + Delta-G solvation = -14927.789164 eV Core-core repulsion = 11964.702964 eV Total energy + Delta-G solvation = -2963.086200 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 282.994 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47745 -38.29935 -36.41010 -36.03247 -33.92574 -32.42919 -29.80466 -26.55882 -25.42480 -22.80498 -21.40824 -20.36676 -17.90587 -17.26538 -16.41174 -15.78096 -15.25921 -15.09059 -14.80402 -14.00481 -13.93473 -13.24457 -13.10229 -12.95594 -12.57458 -12.34233 -12.07800 -11.73040 -11.52398 -11.16576 -11.06335 -11.02713 -10.94553 -10.75804 -10.18929 -9.82145 -9.44829 -9.07376 -8.93759 -8.24290 -6.50393 -6.21830 -3.92483 0.79462 1.76921 2.65783 2.98677 3.06827 3.22493 3.27053 3.30848 3.58991 3.66974 4.05997 4.20192 4.39899 4.69315 5.01563 5.11069 5.13351 5.21652 5.43803 5.59419 5.78006 5.88311 6.13146 6.51245 7.59348 7.63529 8.35098 8.56436 9.23516 10.85589 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.035838 B = 0.003101 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.100453 B = 9025.782466 C = 9286.105490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.139 3.861 15 C -0.129 4.129 16 H 0.136 0.864 17 C -0.132 4.132 18 C -0.004 4.004 19 Cl -0.080 7.080 20 Cl -0.095 7.095 21 H 0.268 0.732 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.399 0.601 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.405 -21.432 -0.090 23.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.392 5.392 14 C 0.015 3.985 15 C -0.148 4.148 16 H 0.154 0.846 17 C -0.171 4.171 18 C -0.055 4.055 19 Cl -0.053 7.053 20 Cl -0.068 7.068 21 H 0.078 0.922 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.234 0.766 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.143 0.857 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.255 -21.679 -0.245 23.199 hybrid contribution 2.598 1.260 -0.246 2.898 sum 10.853 -20.420 -0.491 23.130 Atomic orbital electron populations 1.70017 1.05946 1.27463 1.46856 1.24997 0.95037 0.99044 0.94543 0.86164 0.79394 0.81556 0.78357 1.20266 1.20748 1.19706 1.22865 0.94910 0.91627 1.58947 0.90908 1.85404 1.04884 0.96344 1.96721 1.23529 1.06630 0.95208 1.05017 1.20307 0.86464 0.86219 0.75051 1.90709 1.15334 1.85561 1.47348 1.45939 1.10080 1.04960 1.78265 1.21017 0.93356 0.80091 1.04015 1.23480 1.02464 0.93151 0.95703 0.84637 1.23994 1.04821 0.95463 0.92776 1.26899 0.82798 1.10620 0.85222 1.98770 1.56189 1.97773 1.52555 1.98757 1.21661 1.94108 1.92226 0.92178 0.89125 0.89140 0.76649 0.89898 0.89784 0.85696 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 15 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 15 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 15 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 15 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 15 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 15 10 C -0.15 -3.04 6.16 36.01 0.22 -2.82 15 11 C 0.53 9.70 7.85 -10.99 -0.09 9.61 15 12 O -0.52 -11.50 15.86 5.56 0.09 -11.41 15 13 N -0.74 -9.30 5.56 -60.30 -0.33 -9.63 15 14 C 0.14 1.49 5.87 -4.05 -0.02 1.46 15 15 C -0.13 -0.93 5.69 -90.62 -0.52 -1.44 15 16 H 0.14 0.78 8.04 -51.93 -0.42 0.37 15 17 C -0.13 -0.74 9.93 -26.73 -0.27 -1.00 15 18 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 15 19 Cl -0.08 -0.82 27.27 -51.86 -1.41 -2.23 15 20 Cl -0.09 -0.80 29.29 -51.86 -1.52 -2.31 15 21 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.09 1.67 8.14 -51.92 -0.42 1.24 15 23 H 0.09 1.64 8.14 -51.92 -0.42 1.21 15 24 H 0.40 3.84 8.40 -40.82 -0.34 3.50 15 25 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.08 1.03 6.06 -51.93 -0.31 0.72 15 27 H 0.12 0.47 8.14 -51.93 -0.42 0.05 15 28 H 0.13 0.62 8.14 -51.93 -0.42 0.19 15 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -33.95 296.07 -8.52 -42.47 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.73 Total: -1.23 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.57 Total: -7.23 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.40 Total: -35.02 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -2.93 Total: -4.54 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.95 -8.52 -42.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915192235.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.095 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds