Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00154 * 2 1 4 4 H 1.48511 * 109.47052 * 269.99735 * 3 2 1 5 5 H 1.48503 * 109.47326 * 29.99472 * 3 2 1 6 6 H 1.48493 * 109.47363 * 149.99715 * 3 2 1 7 7 C 1.37882 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99623 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47004 * 179.97438 * 9 7 2 11 11 S 1.80996 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.76204 * 99.99929 * 179.97438 * 11 10 9 13 13 N 1.28989 * 124.82401 * 359.97438 * 12 11 10 14 14 C 1.34785 * 117.85991 * 180.02562 * 13 12 11 15 15 C 1.41127 * 128.68830 * 179.71428 * 14 13 12 16 16 C 1.37393 * 120.41172 * 179.82246 * 15 14 13 17 17 F 1.35104 * 119.72600 * 180.21547 * 16 15 14 18 18 C 1.38895 * 120.54081 * 0.48272 * 16 15 14 19 19 C 1.37725 * 119.95805 * 359.75691 * 18 16 15 20 20 C 1.39245 * 120.24168 * 359.97438 * 19 18 16 21 21 S 1.75804 * 124.82134 * 179.97438 * 12 11 10 22 22 H 0.97001 * 119.99647 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47174 * 59.99859 * 9 7 2 24 24 H 1.09000 * 109.47084 * 299.99871 * 9 7 2 25 25 H 1.09005 * 109.47081 * 60.00034 * 10 9 7 26 26 H 1.09003 * 109.46987 * 300.00414 * 10 9 7 27 27 H 1.07999 * 119.79081 * 0.27103 * 15 14 13 28 28 H 1.07997 * 120.02118 * 179.73151 * 18 16 15 29 29 H 1.07991 * 119.87993 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3402 -5.2296 -0.0002 12 6 2.6900 -6.3622 -0.0009 13 7 3.9349 -6.0245 -0.0012 14 6 4.8547 -7.0097 -0.0022 15 6 6.2619 -6.9027 -0.0083 16 6 7.0453 -8.0315 -0.0047 17 9 8.3911 -7.9129 -0.0062 18 6 6.4649 -9.2934 -0.0051 19 6 5.0934 -9.4196 -0.0041 20 6 4.2848 -8.2860 -0.0021 21 16 2.5313 -8.1131 -0.0011 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8906 26 1 2.8719 -3.6043 -0.8894 27 1 6.7259 -5.9275 -0.0085 28 1 7.0887 -10.1750 -0.0066 29 1 4.6435 -10.4013 -0.0048 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918872236.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -4.606413 kcal Electronic energy + Delta-G solvation = -16095.749193 eV Core-core repulsion = 13150.542820 eV Total energy + Delta-G solvation = -2945.206373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.020 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.16128 -40.23353 -36.66575 -33.81417 -31.17890 -31.01757 -29.90997 -25.54947 -25.12427 -23.45025 -21.81759 -21.28535 -18.77447 -17.80371 -16.93513 -16.63474 -16.15613 -15.92681 -15.70403 -14.84320 -14.55470 -14.30966 -13.97519 -13.79324 -13.76069 -13.20253 -12.24220 -12.09461 -12.01645 -11.79035 -11.25919 -11.08179 -10.70592 -10.37680 -10.34938 -10.22053 -9.86840 -9.69033 -9.31614 -9.21418 -8.49282 -8.31689 -7.46209 -6.13449 -4.17943 0.09719 0.71277 0.81352 1.46661 1.64275 2.01238 2.62111 3.26659 3.30626 3.33162 3.37004 3.75102 4.17777 4.37379 4.55572 4.61207 4.94049 5.15625 5.22827 5.44902 5.66871 5.76386 5.81530 5.88994 6.09358 6.39597 6.58070 7.35367 7.40589 7.46409 7.81727 8.17549 8.86334 9.46644 10.97352 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003767 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.800217 B = 7430.693777 C = 8645.046152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.080 4.080 11 S -0.007 6.007 12 C 0.115 3.885 13 N -0.478 5.478 14 C 0.133 3.867 15 C -0.111 4.111 16 C 0.116 3.884 17 F -0.134 7.134 18 C -0.147 4.147 19 C -0.036 4.036 20 C -0.198 4.198 21 S 0.093 5.907 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.029 0.971 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -19.617 -0.008 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.230 4.230 11 S 0.229 5.771 12 C -0.277 4.277 13 N -0.197 5.197 14 C 0.009 3.991 15 C -0.134 4.134 16 C 0.093 3.907 17 F -0.112 7.112 18 C -0.170 4.170 19 C -0.059 4.059 20 C -0.319 4.319 21 S 0.346 5.654 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.578 -19.755 -0.002 20.821 hybrid contribution 2.875 1.288 -0.010 3.150 sum 9.454 -18.467 -0.012 20.746 Atomic orbital electron populations 1.69959 1.06074 1.27047 1.49850 1.25012 0.94940 0.99399 0.94889 0.86480 0.79788 0.82853 0.78248 1.20495 1.21062 1.19727 1.21030 0.93173 0.89789 1.51969 0.92130 1.19020 0.93377 0.89506 0.98673 1.24100 1.01980 0.90987 1.05892 1.86106 1.03758 0.99877 1.87331 1.29489 0.99014 0.98968 1.00185 1.66973 0.98770 1.33328 1.20585 1.18840 0.93673 0.86366 1.00262 1.20493 0.90266 0.99153 1.03444 1.17146 0.77104 0.93762 1.02644 1.91530 1.28938 1.96889 1.93885 1.21010 0.94898 0.96443 1.04664 1.20113 0.91777 0.96643 0.97325 1.23716 0.97394 0.98283 1.12498 1.84883 1.00341 1.03443 1.76753 0.92681 0.95324 0.95305 0.89451 0.89456 0.83462 0.83640 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.03 0.83 4.98 -27.88 -0.14 0.69 15 10 C -0.08 -1.64 5.07 37.16 0.19 -1.45 15 11 S -0.01 -0.12 22.31 -107.50 -2.40 -2.52 15 12 C 0.11 1.86 7.64 51.57 0.39 2.25 15 13 N -0.48 -8.16 9.83 -10.59 -0.10 -8.27 15 14 C 0.13 1.98 6.94 -84.90 -0.59 1.39 15 15 C -0.11 -1.43 10.07 -38.79 -0.39 -1.82 15 16 C 0.12 1.29 7.26 -39.65 -0.29 1.00 15 17 F -0.13 -1.50 17.25 2.25 0.04 -1.46 15 18 C -0.15 -1.33 10.02 -39.53 -0.40 -1.73 15 19 C -0.04 -0.34 10.05 -39.39 -0.40 -0.74 15 20 C -0.20 -2.53 6.52 -38.63 -0.25 -2.78 15 21 S 0.09 1.20 23.38 -107.50 -2.51 -1.31 15 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 15 25 H 0.09 1.79 8.14 -51.91 -0.42 1.37 15 26 H 0.09 1.79 8.14 -51.91 -0.42 1.37 15 27 H 0.15 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.15 0.89 8.06 -52.49 -0.42 0.46 15 29 H 0.14 0.92 8.06 -52.49 -0.42 0.50 15 LS Contribution 292.83 15.07 4.41 4.41 Total: -1.00 -29.02 292.83 -9.63 -38.64 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -2.50 Total: -4.39 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -2.28 Total: -16.10 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.63 Total: -33.39 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -4.91 Total: -3.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.02 -9.63 -38.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918872236.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.037 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds