Wall clock time and date at job start Tue Mar 31 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00154 * 2 1 4 4 H 1.48511 * 109.47052 * 269.99735 * 3 2 1 5 5 H 1.48503 * 109.47326 * 29.99472 * 3 2 1 6 6 H 1.48493 * 109.47363 * 149.99715 * 3 2 1 7 7 C 1.37882 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99623 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47004 * 179.97438 * 9 7 2 11 11 S 1.80996 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.76204 * 99.99929 * 179.97438 * 11 10 9 13 13 N 1.28989 * 124.82401 * 359.97438 * 12 11 10 14 14 C 1.34785 * 117.85991 * 180.02562 * 13 12 11 15 15 C 1.41127 * 128.68830 * 179.71428 * 14 13 12 16 16 C 1.37393 * 120.41172 * 179.82246 * 15 14 13 17 17 F 1.35104 * 119.72600 * 180.21547 * 16 15 14 18 18 C 1.38895 * 120.54081 * 0.48272 * 16 15 14 19 19 C 1.37725 * 119.95805 * 359.75691 * 18 16 15 20 20 C 1.39245 * 120.24168 * 359.97438 * 19 18 16 21 21 S 1.75804 * 124.82134 * 179.97438 * 12 11 10 22 22 H 0.97001 * 119.99647 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47174 * 59.99859 * 9 7 2 24 24 H 1.09000 * 109.47084 * 299.99871 * 9 7 2 25 25 H 1.09005 * 109.47081 * 60.00034 * 10 9 7 26 26 H 1.09003 * 109.46987 * 300.00414 * 10 9 7 27 27 H 1.07999 * 119.79081 * 0.27103 * 15 14 13 28 28 H 1.07997 * 120.02118 * 179.73151 * 18 16 15 29 29 H 1.07991 * 119.87993 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3402 -5.2296 -0.0002 12 6 2.6900 -6.3622 -0.0009 13 7 3.9349 -6.0245 -0.0012 14 6 4.8547 -7.0097 -0.0022 15 6 6.2619 -6.9027 -0.0083 16 6 7.0453 -8.0315 -0.0047 17 9 8.3911 -7.9129 -0.0062 18 6 6.4649 -9.2934 -0.0051 19 6 5.0934 -9.4196 -0.0041 20 6 4.2848 -8.2860 -0.0021 21 16 2.5313 -8.1131 -0.0011 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6044 0.8906 26 1 2.8719 -3.6043 -0.8894 27 1 6.7259 -5.9275 -0.0085 28 1 7.0887 -10.1750 -0.0066 29 1 4.6435 -10.4013 -0.0048 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918872236.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:14 Heat of formation + Delta-G solvation = -20.209984 kcal Electronic energy + Delta-G solvation = -16096.425814 eV Core-core repulsion = 13150.542820 eV Total energy + Delta-G solvation = -2945.882994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.020 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.04796 -41.25055 -37.66362 -35.84197 -33.00905 -32.06564 -30.89741 -27.42455 -26.34737 -24.40172 -23.19282 -22.78848 -19.79539 -18.85094 -18.72182 -17.90041 -17.10754 -16.87188 -16.83929 -16.53753 -16.08627 -15.44326 -15.43144 -15.05081 -14.80699 -14.32612 -13.93622 -13.70224 -13.12542 -12.98755 -12.87297 -12.52934 -12.24288 -12.22943 -11.95781 -11.74668 -11.26638 -11.20980 -10.85025 -10.62568 -10.34602 -9.27667 -8.74335 -8.25834 -6.38085 -0.93315 -0.34082 -0.18608 0.37564 0.49334 1.01067 1.09404 1.40904 1.41221 1.52872 2.35488 2.39091 2.77881 3.07943 3.31028 3.60652 3.85046 4.09954 4.15489 4.20662 4.30585 4.61395 4.76660 4.86848 4.90673 4.93285 5.33018 5.41965 5.54879 5.70025 6.08342 6.25038 6.73988 7.30927 8.85584 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.003767 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.800217 B = 7430.693777 C = 8645.046152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.041 3.959 10 C -0.069 4.069 11 S -0.001 6.001 12 C 0.082 3.918 13 N -0.502 5.502 14 C 0.095 3.905 15 C -0.126 4.126 16 C 0.117 3.883 17 F -0.134 7.134 18 C -0.123 4.123 19 C -0.029 4.029 20 C -0.204 4.204 21 S 0.150 5.850 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.187 0.813 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 -22.171 -0.018 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.219 4.219 11 S 0.234 5.766 12 C -0.309 4.309 13 N -0.221 5.221 14 C -0.028 4.028 15 C -0.149 4.149 16 C 0.095 3.905 17 F -0.112 7.112 18 C -0.146 4.146 19 C -0.051 4.051 20 C -0.325 4.325 21 S 0.403 5.597 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.158 0.842 28 H 0.204 0.796 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.301 -22.317 -0.013 23.811 hybrid contribution 2.502 1.834 -0.007 3.102 sum 10.803 -20.483 -0.020 23.158 Atomic orbital electron populations 1.70076 1.07640 1.28134 1.50717 1.25933 0.95832 1.03211 0.94340 0.85398 0.78574 0.78218 0.78577 1.19680 1.20431 1.18964 1.21446 0.93539 0.91297 1.51842 0.92006 1.18781 0.93544 0.90928 0.96594 1.23580 1.00852 0.92222 1.05215 1.85798 1.03775 0.98105 1.88934 1.29226 0.98443 1.00826 1.02444 1.66893 0.99568 1.35513 1.20173 1.18999 0.94038 0.86942 1.02861 1.20570 0.90006 0.99937 1.04421 1.17305 0.76946 0.94161 1.02130 1.91537 1.28932 1.96946 1.93818 1.21484 0.95084 0.96659 1.01359 1.20621 0.91700 0.97185 0.95618 1.24062 0.97674 0.98593 1.12193 1.84556 1.00203 0.99443 1.75476 0.92428 0.97323 0.97306 0.90108 0.90094 0.84154 0.79567 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.88 15 2 C 0.01 0.34 5.46 84.66 0.46 0.80 15 3 Si 0.97 43.86 29.54 68.60 2.03 45.88 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 15 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.04 2.12 4.98 29.85 0.15 2.26 15 10 C -0.07 -2.96 5.07 71.98 0.37 -2.59 15 11 S 0.00 -0.05 22.31 -56.49 -1.26 -1.31 15 12 C 0.08 2.66 7.64 130.66 1.00 3.66 15 13 N -0.50 -17.46 9.83 -187.41 -1.84 -19.31 15 14 C 0.09 2.77 6.94 39.77 0.28 3.04 15 15 C -0.13 -3.20 10.07 22.78 0.23 -2.97 15 16 C 0.12 2.30 7.26 22.23 0.16 2.46 15 17 F -0.13 -2.68 17.25 44.97 0.78 -1.90 15 18 C -0.12 -1.66 10.02 22.31 0.22 -1.43 15 19 C -0.03 -0.42 10.05 22.39 0.23 -0.20 15 20 C -0.20 -4.72 6.52 22.88 0.15 -4.58 15 21 S 0.15 3.59 23.38 -56.49 -1.32 2.27 15 22 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 23 H 0.01 0.47 8.14 -2.38 -0.02 0.45 15 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 15 25 H 0.08 3.50 8.14 -2.39 -0.02 3.48 15 26 H 0.08 3.51 8.14 -2.39 -0.02 3.49 15 27 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 28 H 0.19 1.06 8.06 -2.91 -0.02 1.04 15 29 H 0.18 1.25 8.06 -2.92 -0.02 1.22 15 Total: -1.00 -64.89 292.83 3.31 -61.57 By element: Atomic # 1 Polarization: -3.69 SS G_CDS: 1.18 Total: -2.51 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.47 Total: -29.83 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.56 Total: -74.18 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.58 Total: 0.96 kcal Total: -64.89 3.31 -61.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918872236.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.365 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds