Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00209 * 3 2 1 6 6 H 1.48496 * 109.47185 * 60.00184 * 3 2 1 7 7 C 1.37881 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47365 * 300.00183 * 9 7 2 11 11 O 1.42898 * 109.47502 * 60.00104 * 9 7 2 12 12 C 1.53003 * 109.47018 * 180.02562 * 9 7 2 13 13 S 1.81003 * 109.46974 * 180.02562 * 12 9 7 14 14 C 1.76209 * 99.99838 * 180.02562 * 13 12 9 15 15 N 1.30907 * 124.96853 * 0.03912 * 14 13 12 16 16 C 1.36190 * 108.68421 * 179.97438 * 15 14 13 17 17 C 1.39547 * 133.62245 * 180.02562 * 16 15 14 18 18 C 1.37775 * 119.76311 * 179.97438 * 17 16 15 19 19 C 1.38822 * 120.36662 * 0.03070 * 18 17 16 20 20 F 1.35097 * 119.79687 * 180.02562 * 19 18 17 21 21 C 1.38218 * 120.40736 * 359.94269 * 19 18 17 22 22 C 1.38545 * 119.88328 * 0.04208 * 21 19 18 23 23 O 1.34524 * 124.96793 * 180.02562 * 14 13 12 24 24 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96708 * 114.00071 * 59.99637 * 11 9 7 26 26 H 1.08997 * 109.47073 * 59.99743 * 12 9 7 27 27 H 1.09002 * 109.46846 * 299.99468 * 12 9 7 28 28 H 1.07997 * 120.11853 * 359.96315 * 17 16 15 29 29 H 1.08003 * 119.81316 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.05715 * 180.30958 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 16 1.3403 -5.2296 -0.0013 14 6 2.6902 -6.3622 -0.0004 15 7 3.9544 -6.0227 0.0013 16 6 4.7104 -7.1555 0.0021 17 6 6.0851 -7.3956 0.0042 18 6 6.5531 -8.6914 0.0050 19 6 5.6649 -9.7583 0.0030 20 9 6.1364 -11.0243 0.0043 21 6 4.3012 -9.5333 0.0014 22 6 3.8156 -8.2357 0.0009 23 8 2.5722 -7.7023 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.9209 -2.5291 -1.9984 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 6.7796 -6.5686 0.0051 29 1 7.6168 -8.8781 0.0071 30 1 3.6153 -10.3675 0.0049 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919853559.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -56.273301 kcal Electronic energy + Delta-G solvation = -18549.359825 eV Core-core repulsion = 15159.160137 eV Total energy + Delta-G solvation = -3390.199688 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.23686 -43.19676 -37.94230 -36.10020 -34.71701 -32.29924 -31.09664 -30.04091 -29.43039 -25.53967 -24.43908 -23.25582 -22.18320 -21.21598 -18.82827 -18.24226 -17.32370 -17.20754 -16.95175 -16.18465 -15.79788 -15.12704 -14.75538 -14.51920 -14.45525 -14.32088 -13.96430 -13.47195 -13.23130 -12.61949 -12.45540 -11.97374 -11.74855 -11.44447 -11.33640 -11.03125 -11.00273 -10.62332 -10.41477 -10.10364 -9.34714 -9.29494 -8.98520 -8.74254 -8.47265 -7.46074 -6.17439 -4.37788 0.32064 0.84474 0.88265 2.10487 2.36661 2.78222 3.19692 3.27286 3.28598 3.32123 3.95389 4.22447 4.27986 4.38403 4.63607 4.74056 5.09875 5.10052 5.44028 5.61988 5.67440 5.72496 5.79007 5.86329 5.96735 6.03235 6.31531 6.51898 7.34224 7.38244 7.66585 7.89877 8.63537 9.14305 9.38499 10.86670 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.003385 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.153783 B = 8269.825287 C = 8940.485608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.569 4.569 8 H 0.063 0.937 9 C 0.244 3.756 10 H 0.070 0.930 11 O -0.560 6.560 12 C -0.125 4.125 13 S 0.062 5.938 14 C 0.231 3.769 15 N -0.487 5.487 16 C 0.033 3.967 17 C -0.037 4.037 18 C -0.148 4.148 19 C 0.114 3.886 20 F -0.131 7.131 21 C -0.125 4.125 22 C 0.026 3.974 23 O -0.194 6.194 24 H 0.263 0.737 25 H 0.351 0.649 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -15.976 -0.237 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.609 4.609 8 H 0.081 0.919 9 C 0.184 3.816 10 H 0.087 0.913 11 O -0.362 6.362 12 C -0.274 4.274 13 S 0.296 5.704 14 C -0.086 4.086 15 N -0.222 5.222 16 C -0.081 4.081 17 C -0.057 4.057 18 C -0.168 4.168 19 C 0.093 3.907 20 F -0.109 7.109 21 C -0.145 4.145 22 C -0.028 4.028 23 O -0.088 6.088 24 H 0.073 0.927 25 H 0.195 0.805 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.825 -15.538 0.226 17.399 hybrid contribution 2.100 0.181 -0.330 2.134 sum 9.926 -15.357 -0.104 18.285 Atomic orbital electron populations 1.70077 1.05988 1.26856 1.46081 1.25038 0.94796 0.99319 0.93462 0.86485 0.80179 0.83152 0.77839 1.19524 1.20714 1.20710 1.21484 0.93417 0.90094 1.55904 0.91905 1.19305 0.87501 0.87658 0.87154 0.91272 1.86600 1.38230 1.95984 1.15434 1.25182 1.03742 0.91659 1.06828 1.86583 0.99387 0.95913 1.88498 1.29300 0.98859 0.83297 0.97122 1.71399 0.99810 1.27404 1.23546 1.20013 0.95390 0.88361 1.04353 1.20143 0.91647 0.96750 0.97185 1.20974 1.00512 0.90879 1.04464 1.17007 0.90818 0.79378 1.03482 1.91526 1.88613 1.36859 1.93911 1.19494 0.94145 0.93766 1.07062 1.19836 0.82921 0.95294 1.04712 1.84696 1.28507 1.20428 1.75128 0.92673 0.80462 0.88477 0.89031 0.83489 0.83359 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.96 12.84 55.43 0.71 -23.25 16 2 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 3 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.57 -14.60 8.76 -34.44 -0.30 -14.90 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.24 5.70 2.87 -27.88 -0.08 5.62 16 10 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 11 O -0.56 -13.24 12.32 -35.23 -0.43 -13.67 16 12 C -0.13 -2.41 4.78 37.16 0.18 -2.23 16 13 S 0.06 1.06 21.95 -107.50 -2.36 -1.30 16 14 C 0.23 3.94 8.36 52.37 0.44 4.38 16 15 N -0.49 -8.44 10.63 -11.45 -0.12 -8.56 16 16 C 0.03 0.50 7.23 -84.68 -0.61 -0.11 16 17 C -0.04 -0.42 10.10 -39.26 -0.40 -0.82 16 18 C -0.15 -1.40 10.00 -39.53 -0.40 -1.79 16 19 C 0.11 1.19 7.29 -39.37 -0.29 0.90 16 20 F -0.13 -1.33 17.26 2.25 0.04 -1.29 16 21 C -0.12 -1.43 10.03 -39.48 -0.40 -1.83 16 22 C 0.03 0.38 7.41 -38.71 -0.29 0.09 16 23 O -0.19 -3.14 10.79 2.26 0.02 -3.11 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.35 7.31 9.04 45.56 0.41 7.72 16 26 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 27 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 28 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 30 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 292.57 15.07 4.41 4.41 Total: -1.00 -28.94 292.57 -6.65 -35.60 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -1.67 Total: 4.65 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.24 Total: -8.64 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.59 Total: -31.81 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.41 Total: -16.79 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.36 Total: -1.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.94 -6.65 -35.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919853559.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.674 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds