Wall clock time and date at job start Tue Mar 31 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00209 * 3 2 1 6 6 H 1.48496 * 109.47185 * 60.00184 * 3 2 1 7 7 C 1.37881 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47365 * 300.00183 * 9 7 2 11 11 O 1.42898 * 109.47502 * 60.00104 * 9 7 2 12 12 C 1.53003 * 109.47018 * 180.02562 * 9 7 2 13 13 S 1.81003 * 109.46974 * 180.02562 * 12 9 7 14 14 C 1.76209 * 99.99838 * 180.02562 * 13 12 9 15 15 N 1.30907 * 124.96853 * 0.03912 * 14 13 12 16 16 C 1.36190 * 108.68421 * 179.97438 * 15 14 13 17 17 C 1.39547 * 133.62245 * 180.02562 * 16 15 14 18 18 C 1.37775 * 119.76311 * 179.97438 * 17 16 15 19 19 C 1.38822 * 120.36662 * 0.03070 * 18 17 16 20 20 F 1.35097 * 119.79687 * 180.02562 * 19 18 17 21 21 C 1.38218 * 120.40736 * 359.94269 * 19 18 17 22 22 C 1.38545 * 119.88328 * 0.04208 * 21 19 18 23 23 O 1.34524 * 124.96793 * 180.02562 * 14 13 12 24 24 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96708 * 114.00071 * 59.99637 * 11 9 7 26 26 H 1.08997 * 109.47073 * 59.99743 * 12 9 7 27 27 H 1.09002 * 109.46846 * 299.99468 * 12 9 7 28 28 H 1.07997 * 120.11853 * 359.96315 * 17 16 15 29 29 H 1.08003 * 119.81316 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.05715 * 180.30958 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2454 -3.6620 -0.0005 13 16 1.3403 -5.2296 -0.0013 14 6 2.6902 -6.3622 -0.0004 15 7 3.9544 -6.0227 0.0013 16 6 4.7104 -7.1555 0.0021 17 6 6.0851 -7.3956 0.0042 18 6 6.5531 -8.6914 0.0050 19 6 5.6649 -9.7583 0.0030 20 9 6.1364 -11.0243 0.0043 21 6 4.3012 -9.5333 0.0014 22 6 3.8156 -8.2357 0.0009 23 8 2.5722 -7.7023 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.9209 -2.5291 -1.9984 26 1 2.8720 -3.6043 0.8894 27 1 2.8719 -3.6043 -0.8906 28 1 6.7796 -6.5686 0.0051 29 1 7.6168 -8.8781 0.0071 30 1 3.6153 -10.3675 0.0049 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919853559.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:06 Heat of formation + Delta-G solvation = -77.091986 kcal Electronic energy + Delta-G solvation = -18550.262591 eV Core-core repulsion = 15159.160137 eV Total energy + Delta-G solvation = -3391.102454 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.08475 -44.32845 -38.89477 -37.96022 -35.88638 -34.30053 -32.02443 -31.71190 -30.54591 -27.43661 -25.52009 -24.34877 -23.24751 -22.95430 -19.91795 -19.38700 -19.22095 -18.12329 -18.11524 -17.29485 -16.71030 -16.65822 -16.29736 -16.12525 -16.06048 -15.51300 -15.31823 -14.47433 -14.26831 -14.14373 -13.59163 -13.47633 -13.30163 -12.84089 -12.80730 -12.68388 -12.59790 -12.07910 -11.80496 -11.76986 -11.17664 -10.74000 -10.38239 -10.28726 -9.98537 -8.73930 -8.17631 -6.44116 -0.69895 -0.43236 -0.08052 0.96484 0.97010 1.42659 1.45268 1.56537 1.62337 2.31311 2.40018 3.03232 3.09715 3.24579 3.43144 3.76296 3.82832 4.04447 4.13324 4.17725 4.23029 4.51350 4.69163 4.83454 4.87794 4.90556 5.02323 5.45149 5.47836 5.65109 5.94582 6.18004 6.65115 7.28151 7.44471 8.87128 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.036826 B = 0.003385 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.153783 B = 8269.825287 C = 8940.485608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.031 3.969 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.581 4.581 8 H 0.066 0.934 9 C 0.246 3.754 10 H 0.040 0.960 11 O -0.572 6.572 12 C -0.111 4.111 13 S 0.071 5.929 14 C 0.213 3.787 15 N -0.501 5.501 16 C 0.000 4.000 17 C -0.036 4.036 18 C -0.129 4.129 19 C 0.126 3.874 20 F -0.124 7.124 21 C -0.129 4.129 22 C 0.009 3.991 23 O -0.203 6.203 24 H 0.264 0.736 25 H 0.362 0.638 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.167 0.833 29 H 0.188 0.812 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -17.227 -0.421 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.620 4.620 8 H 0.084 0.916 9 C 0.186 3.814 10 H 0.058 0.942 11 O -0.377 6.377 12 C -0.260 4.260 13 S 0.305 5.695 14 C -0.104 4.104 15 N -0.236 5.236 16 C -0.114 4.114 17 C -0.056 4.056 18 C -0.148 4.148 19 C 0.106 3.894 20 F -0.102 7.102 21 C -0.149 4.149 22 C -0.044 4.044 23 O -0.096 6.096 24 H 0.073 0.927 25 H 0.208 0.792 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.184 0.816 29 H 0.205 0.795 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.381 -16.812 0.039 19.759 hybrid contribution 1.463 0.321 -0.276 1.523 sum 11.844 -16.491 -0.238 20.305 Atomic orbital electron populations 1.70198 1.07586 1.27695 1.47675 1.25863 0.95506 1.02822 0.93106 0.85444 0.79123 0.78900 0.77723 1.18703 1.20461 1.20500 1.21859 0.93744 0.91366 1.55063 0.91619 1.19031 0.87396 0.88863 0.86113 0.94174 1.86541 1.38909 1.96117 1.16088 1.24674 1.02502 0.91978 1.06817 1.86374 0.98921 0.94745 1.89446 1.28967 0.98646 0.83718 0.99085 1.71302 1.00189 1.29013 1.23085 1.20444 0.96894 0.87708 1.06307 1.20483 0.90377 0.98321 0.96394 1.21369 1.02258 0.89490 1.01712 1.17117 0.90544 0.79865 1.01882 1.91557 1.88420 1.36579 1.93653 1.19743 0.95186 0.93173 1.06757 1.20204 0.82186 0.96292 1.05716 1.84637 1.29669 1.19930 1.75352 0.92677 0.79186 0.88682 0.88778 0.81560 0.79499 0.81747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.08 12.84 21.45 0.28 -50.80 16 2 C 0.03 1.63 5.40 84.66 0.46 2.09 16 3 Si 0.96 41.51 29.54 68.60 2.03 43.54 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.58 -30.09 8.76 25.60 0.22 -29.87 16 8 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.25 11.78 2.87 29.85 0.09 11.87 16 10 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 11 O -0.57 -27.65 12.32 -148.98 -1.84 -29.49 16 12 C -0.11 -4.34 4.78 71.98 0.34 -3.99 16 13 S 0.07 2.51 21.95 -56.49 -1.24 1.27 16 14 C 0.21 7.34 8.36 130.38 1.09 8.43 16 15 N -0.50 -17.27 10.63 -304.30 -3.23 -20.50 16 16 C 0.00 0.01 7.23 39.28 0.28 0.29 16 17 C -0.04 -0.72 10.10 22.48 0.23 -0.49 16 18 C -0.13 -1.90 10.00 22.30 0.22 -1.68 16 19 C 0.13 2.21 7.29 22.40 0.16 2.37 16 20 F -0.12 -2.05 17.26 44.97 0.78 -1.27 16 21 C -0.13 -2.68 10.03 22.34 0.22 -2.46 16 22 C 0.01 0.25 7.41 22.84 0.17 0.42 16 23 O -0.20 -6.57 10.79 -14.82 -0.16 -6.73 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.36 15.33 9.04 -74.05 -0.67 14.66 16 26 H 0.09 3.71 8.14 -2.40 -0.02 3.69 16 27 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 28 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 29 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 30 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -62.67 292.57 0.63 -62.04 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.53 Total: 14.97 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.49 Total: -13.02 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -2.96 Total: -71.31 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -2.00 Total: -36.22 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.24 Total: 1.27 kcal Total: -62.67 0.63 -62.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919853559.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.054 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds