Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00176 * 2 1 4 4 H 1.48500 * 109.47207 * 270.00399 * 3 2 1 5 5 H 1.48506 * 109.47083 * 30.00302 * 3 2 1 6 6 H 1.48494 * 109.47049 * 150.00117 * 3 2 1 7 7 C 1.37876 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47160 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46965 * 180.02562 * 10 9 7 12 12 O 1.45200 * 109.46887 * 179.97438 * 11 10 9 13 13 C 1.34870 * 117.00388 * 180.02562 * 12 11 10 14 14 O 1.21614 * 119.99483 * 0.02562 * 13 12 11 15 15 C 1.46554 * 120.00562 * 180.02562 * 13 12 11 16 16 C 1.34966 * 125.06252 * 179.97438 * 15 13 12 17 17 C 1.38883 * 113.64511 * 179.97438 * 16 15 13 18 18 C 1.47348 * 122.95207 * 180.02562 * 17 16 15 19 19 N 1.34780 * 119.99209 * 180.02562 * 18 17 16 20 20 O 1.21614 * 120.00510 * 0.02562 * 18 17 16 21 21 C 1.36696 * 114.08707 * 0.02562 * 17 16 15 22 22 S 1.70592 * 110.53568 * 0.26610 * 21 17 16 23 23 H 0.96999 * 119.99935 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47196 * 60.00362 * 9 7 2 25 25 H 1.09001 * 109.47691 * 300.00222 * 9 7 2 26 26 H 1.08999 * 109.46841 * 60.00562 * 10 9 7 27 27 H 1.08998 * 109.46994 * 300.00031 * 10 9 7 28 28 H 1.08999 * 109.46946 * 60.00549 * 11 10 9 29 29 H 1.08990 * 109.47374 * 300.00092 * 11 10 9 30 30 H 1.07999 * 123.17934 * 0.03951 * 16 15 13 31 31 H 0.96994 * 120.00626 * 359.97438 * 19 18 17 32 32 H 0.97004 * 119.99449 * 180.02562 * 19 18 17 33 33 H 1.08002 * 124.72813 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0907 -0.0018 13 6 1.9081 -7.3371 -0.0029 14 8 0.7025 -7.4963 -0.0039 15 6 2.8008 -8.4994 -0.0031 16 6 2.3969 -9.7872 -0.0037 17 6 3.4442 -10.6994 -0.0042 18 6 3.2364 -12.1581 -0.0054 19 7 4.2971 -12.9897 -0.0054 20 8 2.1080 -12.6117 -0.0065 21 6 4.6845 -10.1248 -0.0034 22 16 4.5560 -8.4238 0.0054 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8717 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8538 -5.0445 -0.8914 29 1 0.8531 -5.0451 0.8885 30 1 1.3575 -10.0806 -0.0048 31 1 5.1970 -12.6280 -0.0049 32 1 4.1603 -13.9501 -0.0066 33 1 5.6159 -10.6716 -0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920602705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = -133.726034 kcal Electronic energy + Delta-G solvation = -18367.522729 eV Core-core repulsion = 15097.424743 eV Total energy + Delta-G solvation = -3270.097986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58742 -40.85610 -38.41393 -37.56348 -35.94440 -34.82355 -33.71503 -31.38432 -29.04308 -26.83205 -25.69660 -24.30829 -22.19737 -21.78303 -20.28970 -19.97830 -18.66003 -18.25475 -18.02546 -17.78043 -17.69561 -16.49035 -16.44126 -16.03480 -15.68251 -15.41511 -14.73502 -14.29198 -14.16944 -14.12401 -13.84431 -13.73548 -13.66723 -12.83064 -12.51666 -12.48874 -12.30006 -12.12886 -11.99247 -11.51175 -11.45187 -11.25951 -11.21617 -10.75061 -10.56723 -10.23543 -9.73190 -8.21000 -6.32632 -0.85071 0.23062 0.39632 0.67016 1.39768 1.44177 1.44245 1.53000 1.55677 2.26439 2.42070 2.56022 3.13130 3.53918 3.84913 3.97940 4.00851 4.01360 4.03022 4.38113 4.48126 4.72570 4.79162 4.87168 4.94819 5.06680 5.28556 5.49574 5.63878 5.80688 5.85794 6.19002 6.40679 6.47766 6.83581 7.28195 7.37021 8.91292 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.048686 B = 0.002603 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.971236 B =10755.001700 C =11304.219723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.349 6.349 13 C 0.532 3.468 14 O -0.535 6.535 15 C -0.302 4.302 16 C -0.008 4.008 17 C -0.194 4.194 18 C 0.583 3.417 19 N -0.822 5.822 20 O -0.592 6.592 21 C -0.166 4.166 22 S 0.368 5.632 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.138 0.862 31 H 0.420 0.580 32 H 0.415 0.585 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.194 -24.509 0.014 30.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.129 4.129 11 C 0.005 3.995 12 O -0.266 6.266 13 C 0.377 3.623 14 O -0.427 6.427 15 C -0.419 4.419 16 C -0.041 4.041 17 C -0.210 4.210 18 C 0.367 3.633 19 N -0.387 5.387 20 O -0.474 6.474 21 C -0.306 4.306 22 S 0.637 5.363 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.015 0.985 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.252 0.748 32 H 0.248 0.752 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 18.022 -23.309 0.029 29.463 hybrid contribution -1.484 -0.406 -0.022 1.539 sum 16.538 -23.715 0.007 28.912 Atomic orbital electron populations 1.70107 1.07956 1.27918 1.51530 1.26037 0.95782 1.03624 0.94653 0.85372 0.78670 0.78040 0.78513 1.19740 1.21004 1.18352 1.21620 0.93827 0.91714 1.50730 0.91403 1.18947 0.94311 0.92544 0.95455 1.21466 0.98729 0.89816 1.02933 1.23246 0.90934 0.83200 1.02115 1.86522 1.41642 1.14605 1.83786 1.20156 0.86550 0.83255 0.72291 1.90882 1.17142 1.87055 1.47637 1.23079 1.00952 0.93972 1.23936 1.20319 1.01556 0.89776 0.92425 1.18794 0.92716 0.94221 1.15309 1.17693 0.84700 0.86024 0.74894 1.43421 1.08830 1.10494 1.75958 1.90851 1.25459 1.78587 1.52520 1.26945 1.02570 1.01706 0.99399 1.83367 0.93999 0.98267 1.60676 0.92726 0.98556 0.98548 0.91060 0.91055 0.91734 0.91722 0.84381 0.74795 0.75204 0.74996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.72 5.53 30.60 0.17 -3.55 16 11 C 0.08 2.92 5.48 71.98 0.39 3.32 16 12 O -0.35 -11.49 10.06 -57.84 -0.58 -12.07 16 13 C 0.53 17.40 7.93 69.99 0.55 17.96 16 14 O -0.54 -21.23 16.59 19.47 0.32 -20.90 16 15 C -0.30 -7.31 6.37 23.69 0.15 -7.16 16 16 C -0.01 -0.19 9.47 21.67 0.21 0.01 16 17 C -0.19 -3.17 5.82 -21.09 -0.12 -3.29 16 18 C 0.58 10.25 8.06 86.64 0.70 10.95 16 19 N -0.82 -4.89 8.84 -175.93 -1.56 -6.45 16 20 O -0.59 -16.98 17.52 -4.08 -0.07 -17.05 16 21 C -0.17 -1.23 10.41 67.46 0.70 -0.52 16 22 S 0.37 4.72 22.87 -56.49 -1.29 3.42 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.14 3.97 7.95 -2.91 -0.02 3.95 16 31 H 0.42 -0.99 7.29 -92.71 -0.68 -1.66 16 32 H 0.42 1.72 8.93 -92.70 -0.83 0.89 16 33 H 0.23 -0.96 6.99 -2.91 -0.02 -0.98 16 Total: -1.00 -80.41 314.68 2.39 -78.02 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -0.34 Total: -3.36 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 3.60 Total: -10.59 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -1.27 Total: -63.11 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -0.33 Total: -50.02 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.29 Total: 3.42 kcal Total: -80.41 2.39 -78.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920602705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.708 kcal (2) G-P(sol) polarization free energy of solvation -80.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds