Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48508 * 109.46994 * 269.99757 * 3 2 1 5 5 H 1.48504 * 109.47113 * 29.99678 * 3 2 1 6 6 H 1.48493 * 109.47370 * 149.99744 * 3 2 1 7 7 C 1.38798 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00034 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00093 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47051 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.34704 * 116.99598 * 180.02562 * 13 12 11 15 15 O 1.21408 * 120.00008 * 359.97438 * 14 13 12 16 16 C 1.48083 * 119.99654 * 180.02562 * 14 13 12 17 17 C 1.36043 * 119.76920 * 179.97438 * 16 14 13 18 18 C 1.42016 * 119.02643 * 180.02562 * 17 16 14 19 19 O 1.22189 * 120.69511 * 180.02562 * 18 17 16 20 20 C 1.41265 * 118.62121 * 359.97438 * 18 17 16 21 21 C 1.35391 * 119.44603 * 0.02562 * 20 18 17 22 22 N 1.34736 * 120.96194 * 359.97438 * 21 20 18 23 23 H 0.96997 * 119.25928 * 180.02562 * 22 21 20 24 24 H 0.97008 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47073 * 59.99868 * 10 9 7 26 26 H 1.09002 * 109.46587 * 299.99643 * 10 9 7 27 27 H 1.08997 * 109.47546 * 59.99884 * 11 10 9 28 28 H 1.08999 * 109.47263 * 299.99849 * 11 10 9 29 29 H 1.08997 * 109.46934 * 59.99639 * 12 11 10 30 30 H 1.08999 * 109.47071 * 300.00097 * 12 11 10 31 31 H 1.07997 * 120.48823 * 0.02562 * 17 16 14 32 32 H 1.07998 * 120.27413 * 179.72400 * 20 18 17 33 33 H 1.08000 * 119.51391 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9793 -5.3242 0.0036 12 6 3.1513 -6.3077 0.0038 13 8 2.6421 -7.6674 0.0050 14 6 3.5517 -8.6610 0.0059 15 8 4.7371 -8.3988 0.0052 16 6 3.1056 -10.0731 0.0066 17 6 4.0282 -11.0729 0.0070 18 6 3.5829 -12.4214 0.0071 19 8 4.3850 -13.3432 0.0079 20 6 2.1932 -12.6752 0.0074 21 6 1.3267 -11.6349 0.0070 22 7 1.7708 -10.3628 0.0069 23 1 1.1281 -9.6363 0.0070 24 1 -0.4851 0.8401 -0.0004 25 1 3.1245 -3.7305 0.8927 26 1 3.1244 -3.7321 -0.8873 27 1 1.3709 -5.4848 -0.8864 28 1 1.3704 -5.4838 0.8935 29 1 3.7601 -6.1472 0.8936 30 1 3.7598 -6.1480 -0.8863 31 1 5.0837 -10.8444 0.0072 32 1 1.8251 -13.6905 0.0029 33 1 0.2640 -11.8276 0.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924134913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = -99.914847 kcal Electronic energy + Delta-G solvation = -18283.655517 eV Core-core repulsion = 15015.023695 eV Total energy + Delta-G solvation = -3268.631823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70175 -40.32202 -37.99643 -37.20659 -33.78831 -32.54215 -32.48614 -31.70412 -27.30435 -25.72588 -24.97484 -23.89411 -21.81444 -21.55494 -19.68678 -18.37846 -17.56002 -17.32447 -17.09883 -16.99682 -15.74351 -15.48378 -15.11942 -14.89561 -14.71524 -14.60252 -13.70464 -13.53994 -13.20156 -13.07694 -13.02469 -12.94195 -12.28149 -11.57900 -11.39484 -11.30718 -11.11893 -10.97974 -10.75060 -10.56585 -10.32072 -9.84199 -9.73304 -9.15859 -8.54088 -8.47960 -6.67263 -6.33432 -4.05464 0.08112 0.85185 1.84871 2.07095 2.25921 3.13681 3.15876 3.23005 3.35981 3.39953 3.99382 4.11659 4.17645 4.40031 4.58520 4.86582 4.87243 4.92307 5.03472 5.15845 5.21607 5.26544 5.57904 5.57989 5.65147 5.84819 5.97201 6.09049 6.15296 6.26381 6.38092 6.48342 7.11593 7.50900 7.68570 8.26276 9.13322 10.74664 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.055118 B = 0.002390 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.882003 B =11712.276603 C =12194.410211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.074 0.926 9 S -0.123 6.123 10 C -0.116 4.116 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.355 6.355 14 C 0.502 3.498 15 O -0.471 6.471 16 C 0.136 3.864 17 C -0.195 4.195 18 C 0.390 3.610 19 O -0.516 6.516 20 C -0.297 4.297 21 C 0.156 3.844 22 N -0.571 5.571 23 H 0.432 0.568 24 H 0.268 0.732 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 -19.680 0.009 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.105 5.895 10 C -0.265 4.265 11 C -0.136 4.136 12 C 0.000 4.000 13 O -0.272 6.272 14 C 0.343 3.657 15 O -0.356 6.356 16 C 0.028 3.972 17 C -0.221 4.221 18 C 0.281 3.719 19 O -0.402 6.402 20 C -0.322 4.322 21 C 0.026 3.974 22 N -0.180 5.180 23 H 0.270 0.730 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.170 0.830 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.510 -20.068 0.013 20.074 hybrid contribution 1.589 1.813 -0.009 2.411 sum 1.079 -18.255 0.004 18.287 Atomic orbital electron populations 1.70010 1.05942 1.27522 1.46978 1.25024 0.95115 0.99186 0.94415 0.86136 0.79445 0.81344 0.78450 1.20193 1.20688 1.19628 1.22682 0.94589 0.90561 1.58923 0.90783 1.84639 1.08568 0.99335 1.96915 1.23183 1.03660 0.96099 1.03524 1.21319 0.96249 0.91641 1.04438 1.23475 0.98225 0.74975 1.03337 1.86449 1.39694 1.17641 1.83420 1.20790 0.84922 0.85465 0.74494 1.90924 1.17362 1.83760 1.43592 1.19335 0.84498 0.91018 1.02361 1.23151 1.01214 0.93452 1.04237 1.17230 0.89584 0.88225 0.76831 1.90830 1.57757 1.46495 1.45075 1.22470 0.94956 1.00042 1.14738 1.21835 1.00627 0.82441 0.92478 1.41055 1.06121 1.09114 1.61737 0.73042 0.92176 0.91592 0.91600 0.90187 0.90182 0.90467 0.90457 0.81944 0.82954 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 13.22 55.49 0.73 -24.32 16 2 C 0.07 1.97 5.49 -17.43 -0.10 1.88 16 3 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.52 -14.26 9.50 30.94 0.29 -13.96 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.12 -3.00 21.44 -107.50 -2.30 -5.30 16 10 C -0.12 -2.10 5.67 37.16 0.21 -1.89 16 11 C -0.10 -1.34 5.60 -26.73 -0.15 -1.49 16 12 C 0.07 0.86 5.47 37.16 0.20 1.06 16 13 O -0.36 -3.58 9.55 -40.51 -0.39 -3.97 16 14 C 0.50 5.27 7.95 34.77 0.28 5.54 16 15 O -0.47 -6.31 16.07 -19.19 -0.31 -6.61 16 16 C 0.14 1.16 6.77 -82.50 -0.56 0.60 16 17 C -0.19 -2.01 9.56 -38.92 -0.37 -2.39 16 18 C 0.39 4.49 6.78 -36.99 -0.25 4.24 16 19 O -0.52 -8.12 17.89 4.75 0.08 -8.03 16 20 C -0.30 -2.20 10.00 -39.45 -0.39 -2.59 16 21 C 0.16 0.62 11.13 -17.29 -0.19 0.43 16 22 N -0.57 -2.89 5.24 -9.83 -0.05 -2.95 16 23 H 0.43 1.27 8.19 -40.82 -0.33 0.93 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 26 H 0.07 1.18 8.14 -51.91 -0.42 0.75 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.16 1.77 7.58 -52.49 -0.40 1.37 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.18 -0.07 8.06 -52.49 -0.42 -0.50 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -34.73 315.05 -7.20 -41.92 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -3.66 Total: -2.75 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.03 Total: -8.56 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.68 Total: -27.27 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.61 Total: -18.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.30 Total: -5.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.73 -7.20 -41.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924134913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.993 kcal (2) G-P(sol) polarization free energy of solvation -34.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds