Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48508 * 109.46994 * 269.99757 * 3 2 1 5 5 H 1.48504 * 109.47113 * 29.99678 * 3 2 1 6 6 H 1.48493 * 109.47370 * 149.99744 * 3 2 1 7 7 C 1.38798 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00034 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99963 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00093 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46985 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47051 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46965 * 179.97438 * 12 11 10 14 14 C 1.34704 * 116.99598 * 180.02562 * 13 12 11 15 15 O 1.21408 * 120.00008 * 359.97438 * 14 13 12 16 16 C 1.48083 * 119.99654 * 180.02562 * 14 13 12 17 17 C 1.36043 * 119.76920 * 179.97438 * 16 14 13 18 18 C 1.42016 * 119.02643 * 180.02562 * 17 16 14 19 19 O 1.22189 * 120.69511 * 180.02562 * 18 17 16 20 20 C 1.41265 * 118.62121 * 359.97438 * 18 17 16 21 21 C 1.35391 * 119.44603 * 0.02562 * 20 18 17 22 22 N 1.34736 * 120.96194 * 359.97438 * 21 20 18 23 23 H 0.96997 * 119.25928 * 180.02562 * 22 21 20 24 24 H 0.97008 * 120.00117 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47073 * 59.99868 * 10 9 7 26 26 H 1.09002 * 109.46587 * 299.99643 * 10 9 7 27 27 H 1.08997 * 109.47546 * 59.99884 * 11 10 9 28 28 H 1.08999 * 109.47263 * 299.99849 * 11 10 9 29 29 H 1.08997 * 109.46934 * 59.99639 * 12 11 10 30 30 H 1.08999 * 109.47071 * 300.00097 * 12 11 10 31 31 H 1.07997 * 120.48823 * 0.02562 * 17 16 14 32 32 H 1.07998 * 120.27413 * 179.72400 * 20 18 17 33 33 H 1.08000 * 119.51391 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5159 -3.8914 0.0029 11 6 1.9793 -5.3242 0.0036 12 6 3.1513 -6.3077 0.0038 13 8 2.6421 -7.6674 0.0050 14 6 3.5517 -8.6610 0.0059 15 8 4.7371 -8.3988 0.0052 16 6 3.1056 -10.0731 0.0066 17 6 4.0282 -11.0729 0.0070 18 6 3.5829 -12.4214 0.0071 19 8 4.3850 -13.3432 0.0079 20 6 2.1932 -12.6752 0.0074 21 6 1.3267 -11.6349 0.0070 22 7 1.7708 -10.3628 0.0069 23 1 1.1281 -9.6363 0.0070 24 1 -0.4851 0.8401 -0.0004 25 1 3.1245 -3.7305 0.8927 26 1 3.1244 -3.7321 -0.8873 27 1 1.3709 -5.4848 -0.8864 28 1 1.3704 -5.4838 0.8935 29 1 3.7601 -6.1472 0.8936 30 1 3.7598 -6.1480 -0.8863 31 1 5.0837 -10.8444 0.0072 32 1 1.8251 -13.6905 0.0029 33 1 0.2640 -11.8276 0.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924134913.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -122.755497 kcal Electronic energy + Delta-G solvation = -18284.645962 eV Core-core repulsion = 15015.023695 eV Total energy + Delta-G solvation = -3269.622268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.47006 -41.15295 -38.80235 -38.15864 -34.97938 -34.58826 -33.18677 -32.43015 -28.48628 -27.64496 -25.95851 -24.50488 -22.87397 -22.51267 -20.39803 -19.55612 -19.09026 -18.15625 -18.02274 -17.80886 -16.89842 -16.55613 -16.37222 -16.10407 -15.76759 -15.74585 -15.07381 -14.42944 -14.42383 -14.05751 -13.86291 -13.81509 -13.68383 -13.17696 -12.96379 -12.66526 -12.49449 -12.46191 -12.22256 -11.60779 -11.52411 -11.15230 -10.94318 -10.65744 -10.35997 -9.26053 -8.67076 -8.38926 -6.14331 -0.72639 0.31211 0.92147 1.22403 1.33068 1.39150 1.48576 1.63710 1.78843 2.26531 2.63066 2.96115 3.13102 3.31922 3.63675 3.82553 3.84505 3.90751 3.96326 4.13026 4.30855 4.32060 4.45524 4.55512 4.68314 4.93567 4.97419 5.02282 5.24350 5.35496 5.40136 5.53773 5.97034 6.17294 6.23306 6.92881 7.04531 8.70060 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.055118 B = 0.002390 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.882003 B =11712.276603 C =12194.410211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.181 6.181 10 C -0.095 4.095 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.341 6.341 14 C 0.510 3.490 15 O -0.501 6.501 16 C 0.154 3.846 17 C -0.216 4.216 18 C 0.371 3.629 19 O -0.586 6.586 20 C -0.318 4.318 21 C 0.196 3.804 22 N -0.548 5.548 23 H 0.448 0.552 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.165 0.835 33 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -19.446 0.002 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.048 5.952 10 C -0.244 4.244 11 C -0.124 4.124 12 C 0.006 3.994 13 O -0.257 6.257 14 C 0.352 3.648 15 O -0.388 6.388 16 C 0.043 3.957 17 C -0.242 4.242 18 C 0.268 3.732 19 O -0.478 6.478 20 C -0.342 4.342 21 C 0.065 3.935 22 N -0.158 5.158 23 H 0.290 0.710 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.163 0.837 32 H 0.182 0.818 33 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -1.972 -19.806 0.006 19.904 hybrid contribution 1.933 1.751 -0.008 2.608 sum -0.039 -18.056 -0.001 18.056 Atomic orbital electron populations 1.70130 1.07544 1.28582 1.47916 1.26010 0.96016 1.02982 0.93813 0.85059 0.78208 0.76652 0.78783 1.19384 1.20014 1.18857 1.23055 0.94834 0.92091 1.58859 0.90852 1.84554 1.12935 1.00657 1.97058 1.23090 1.00880 0.96739 1.03725 1.21125 0.96862 0.89319 1.05082 1.23236 0.97083 0.75254 1.03805 1.86420 1.39087 1.16986 1.83252 1.20983 0.84456 0.85925 0.73463 1.90927 1.18756 1.84184 1.44942 1.18957 0.85782 0.89311 1.01601 1.22971 1.01060 0.93844 1.06370 1.17774 0.91275 0.87831 0.76335 1.90793 1.59450 1.47868 1.49712 1.22476 0.93108 1.02010 1.16564 1.22637 1.02625 0.80482 0.87753 1.41282 1.04955 1.10546 1.58974 0.71020 0.91924 0.91370 0.91354 0.89590 0.89590 0.90133 0.90116 0.83730 0.81783 0.74622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.45 13.22 21.65 0.29 -52.17 16 2 C 0.02 0.93 5.49 84.86 0.47 1.40 16 3 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.54 -29.67 9.50 67.95 0.65 -29.02 16 8 H 0.07 3.88 7.80 -2.91 -0.02 3.86 16 9 S -0.18 -8.82 21.44 -56.49 -1.21 -10.04 16 10 C -0.10 -3.31 5.67 71.98 0.41 -2.91 16 11 C -0.09 -2.13 5.60 30.59 0.17 -1.95 16 12 C 0.08 1.67 5.47 71.98 0.39 2.07 16 13 O -0.34 -5.83 9.55 -56.13 -0.54 -6.37 16 14 C 0.51 9.73 7.95 70.44 0.56 10.29 16 15 O -0.50 -13.08 16.07 20.13 0.32 -12.75 16 16 C 0.15 2.33 6.77 40.51 0.27 2.60 16 17 C -0.22 -4.59 9.56 22.70 0.22 -4.38 16 18 C 0.37 8.85 6.78 23.95 0.16 9.01 16 19 O -0.59 -20.08 17.89 -5.94 -0.11 -20.19 16 20 C -0.32 -4.08 10.00 22.36 0.22 -3.86 16 21 C 0.20 0.62 11.13 83.59 0.93 1.55 16 22 N -0.55 -3.26 5.24 -185.03 -0.97 -4.23 16 23 H 0.45 0.23 8.19 -92.71 -0.76 -0.53 16 24 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 25 H 0.07 2.34 8.14 -2.40 -0.02 2.32 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.14 3.49 7.58 -2.91 -0.02 3.47 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.24 -2.00 8.06 -2.91 -0.02 -2.02 16 Total: -1.00 -80.03 315.05 4.65 -75.38 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 0.38 Total: 1.18 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 4.45 Total: -15.20 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.68 Total: -56.40 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.32 Total: -39.31 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.21 Total: -10.04 kcal Total: -80.03 4.65 -75.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924134913.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.378 kcal (2) G-P(sol) polarization free energy of solvation -80.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds