Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38243 * 120.00381 * 2 1 4 4 C 1.38216 * 120.00844 * 180.02562 * 3 2 1 5 5 C 1.38263 * 120.02131 * 0.02562 * 4 3 2 6 6 C 1.38203 * 120.00701 * 359.74301 * 5 4 3 7 7 C 1.50709 * 120.00362 * 180.25524 * 6 5 4 8 8 N 1.46492 * 109.47311 * 260.25319 * 7 6 5 9 9 C 1.46505 * 119.99998 * 270.00312 * 8 7 6 10 10 C 1.36940 * 120.00108 * 89.99897 * 8 7 6 11 11 H 1.08003 * 119.99562 * 21.27955 * 10 8 7 12 12 C 1.38807 * 120.00266 * 201.28147 * 10 8 7 13 13 N 1.31625 * 119.99708 * 14.58694 * 12 10 8 14 14 Si 1.86797 * 120.00279 * 194.58638 * 12 10 8 15 15 H 1.48500 * 109.47047 * 84.86357 * 14 12 10 16 16 H 1.48495 * 109.47321 * 204.86242 * 14 12 10 17 17 H 1.48500 * 109.46972 * 324.86181 * 14 12 10 18 18 C 1.38294 * 120.00295 * 180.02562 * 2 1 3 19 19 Br 1.89102 * 120.01342 * 359.95649 * 18 2 1 20 20 H 1.08998 * 109.47025 * 269.97653 * 1 2 3 21 21 H 1.09002 * 109.46856 * 29.97662 * 1 2 3 22 22 H 1.08994 * 109.47007 * 149.97870 * 1 2 3 23 23 H 1.08003 * 119.99483 * 0.04304 * 3 2 1 24 24 H 1.07998 * 119.99040 * 180.02562 * 4 3 2 25 25 H 1.07995 * 120.00012 * 180.02562 * 5 4 3 26 26 H 1.09004 * 109.46652 * 20.25986 * 7 6 5 27 27 H 1.09005 * 109.46703 * 140.25143 * 7 6 5 28 28 H 1.08998 * 109.46902 * 93.66659 * 9 8 7 29 29 H 1.09001 * 109.46890 * 213.66551 * 9 8 7 30 30 H 1.08998 * 109.46547 * 333.66194 * 9 8 7 31 31 H 0.97001 * 119.99825 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2724 0.0002 -0.0016 6 6 3.5821 -1.1971 0.0032 7 6 4.3363 -2.5018 0.0079 8 7 4.3777 -3.0468 -1.3513 9 6 3.3159 -3.9442 -1.8133 10 6 5.4089 -2.7174 -2.1900 11 1 6.3428 -2.3591 -1.7826 12 6 5.2539 -2.8439 -3.5635 13 7 4.0526 -2.9987 -4.0787 14 14 6.7500 -2.7944 -4.6809 15 1 7.3506 -4.1500 -4.7642 16 1 6.3404 -2.3503 -6.0373 17 1 7.7485 -1.8437 -4.1293 18 6 2.1986 -1.1976 -0.0005 19 35 1.2536 -2.8356 0.0000 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5141 23 1 1.6583 2.1325 0.0007 24 1 4.1203 2.1327 -0.0001 25 1 5.3523 0.0007 -0.0016 26 1 5.3530 -2.3325 0.3627 27 1 3.8343 -3.2093 0.6679 28 1 2.5481 -3.3649 -2.3261 29 1 3.7351 -4.6799 -2.4997 30 1 2.8746 -4.4556 -0.9578 31 1 3.9443 -3.0875 -5.0386 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929493107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = 51.510382 kcal Electronic energy + Delta-G solvation = -15061.712537 eV Core-core repulsion = 12583.175613 eV Total energy + Delta-G solvation = -2478.536924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.01005 -35.58929 -32.76685 -32.16620 -30.47904 -29.08849 -26.52109 -25.87169 -25.55272 -21.91414 -21.09607 -19.80340 -16.68387 -15.91077 -15.25430 -14.84642 -14.34786 -13.89293 -13.37525 -13.10560 -13.05608 -12.63021 -12.06587 -11.78229 -11.59942 -11.42892 -10.95031 -10.82637 -10.74021 -10.54910 -10.30751 -10.06155 -10.01843 -9.86773 -8.97831 -8.49208 -8.12676 -7.97715 -6.74838 -5.71334 -3.13827 1.68157 1.84814 2.30518 3.38988 3.44756 3.45890 4.13366 4.52699 5.15032 5.22529 5.37744 5.52513 5.60226 5.75665 5.80234 5.88628 5.97016 6.04178 6.22310 6.34829 6.53271 6.63104 6.82026 6.87752 6.94950 7.14013 7.39786 7.47380 7.79506 7.90411 8.39562 9.23922 9.86678 10.36261 11.32409 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.021995 B = 0.008247 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.715651 B = 3394.233053 C = 4065.374782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.111 4.111 6 C -0.049 4.049 7 C 0.172 3.828 8 N -0.582 5.582 9 C 0.160 3.840 10 C -0.254 4.254 11 H 0.070 0.930 12 C 0.004 3.996 13 N -0.898 5.898 14 Si 0.904 3.096 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.280 1.280 18 C -0.080 4.080 19 Br -0.057 7.057 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.007 0.993 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 4.389 10.033 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.159 4.159 4 C -0.125 4.125 5 C -0.131 4.131 6 C -0.055 4.055 7 C 0.044 3.956 8 N -0.302 5.302 9 C 0.015 3.985 10 C -0.384 4.384 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.542 5.542 14 Si 0.734 3.266 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.205 1.205 18 C -0.160 4.160 19 Br 0.029 6.971 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.093 0.907 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.880 3.667 9.814 12.534 hybrid contribution 0.952 0.674 -0.985 1.527 sum -5.928 4.340 8.828 11.486 Atomic orbital electron populations 1.20912 0.91211 1.03228 1.02211 1.19664 0.95908 0.91917 0.99240 1.20745 0.94211 0.96472 1.04471 1.21125 0.94206 0.97920 0.99201 1.20945 0.99823 0.91376 1.00966 1.21152 0.92190 0.98882 0.93256 1.20140 0.97135 0.89013 0.89272 1.44126 1.26184 1.49993 1.09924 1.21121 0.90692 0.92280 0.94379 1.19242 0.91165 1.40699 0.87302 0.91246 1.25031 0.96291 1.01243 0.96989 1.70112 1.19788 1.53240 1.11081 0.86280 0.82319 0.77849 0.80123 1.21387 1.21781 1.20550 1.21461 0.94323 0.90407 1.09830 1.96522 1.74800 1.28275 1.97471 0.91240 0.91680 0.90728 0.86373 0.86448 0.85934 0.92606 0.92539 0.94663 0.94346 0.97427 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.55 36.01 0.34 -1.30 16 2 C -0.07 -1.11 5.88 -104.60 -0.62 -1.73 16 3 C -0.14 -2.20 9.70 -39.59 -0.38 -2.58 16 4 C -0.11 -1.71 10.05 -39.58 -0.40 -2.11 16 5 C -0.11 -2.06 9.67 -39.59 -0.38 -2.44 16 6 C -0.05 -0.99 5.47 -104.59 -0.57 -1.56 16 7 C 0.17 3.65 5.38 -5.19 -0.03 3.63 16 8 N -0.58 -14.81 2.91 -182.50 -0.53 -15.34 16 9 C 0.16 4.02 7.21 59.85 0.43 4.45 16 10 C -0.25 -7.00 9.67 -15.06 -0.15 -7.15 16 11 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 12 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 13 N -0.90 -26.55 10.71 55.49 0.59 -25.95 16 14 Si 0.90 22.03 29.58 -169.99 -5.03 17.00 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C -0.08 -1.55 6.22 -39.52 -0.25 -1.79 16 19 Br -0.06 -1.02 25.87 -68.01 -1.76 -2.78 16 20 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 22 H 0.07 1.09 6.65 -51.93 -0.35 0.74 16 23 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 24 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 25 H 0.12 2.13 8.04 -52.49 -0.42 1.71 16 26 H 0.06 1.12 7.89 -51.93 -0.41 0.71 16 27 H 0.06 1.12 6.87 -51.93 -0.36 0.77 16 28 H 0.04 0.96 6.79 -51.93 -0.35 0.60 16 29 H 0.04 1.04 7.17 -51.93 -0.37 0.67 16 30 H 0.01 0.16 6.19 -51.93 -0.32 -0.16 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 272.36 15.07 4.10 4.10 Total: -1.00 -30.22 272.36 -8.52 -38.74 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.82 Total: -3.20 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.08 Total: -12.57 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.06 Total: -41.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -1.76 Total: -2.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.22 -8.52 -38.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929493107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.245 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds