Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36634 * 119.99613 * 2 1 4 4 H 1.07999 * 119.99381 * 134.67881 * 3 2 1 5 5 C 1.39217 * 120.00107 * 314.67339 * 3 2 1 6 6 N 1.31244 * 120.00114 * 4.34755 * 5 3 2 7 7 Si 1.86798 * 119.99844 * 184.34910 * 5 3 2 8 8 H 1.48508 * 109.47072 * 89.99895 * 7 5 3 9 9 H 1.48503 * 109.47376 * 209.99975 * 7 5 3 10 10 H 1.48494 * 109.47331 * 330.00268 * 7 5 3 11 11 C 1.34775 * 120.00405 * 180.02562 * 2 1 3 12 12 O 1.21571 * 119.99900 * 2.60011 * 11 2 1 13 13 C 1.48011 * 120.00229 * 182.61264 * 11 2 1 14 14 N 1.32880 * 119.59199 * 343.47527 * 13 11 2 15 15 C 1.31333 * 121.80191 * 179.97438 * 14 13 11 16 16 C 1.39824 * 120.76808 * 0.02562 * 15 14 13 17 17 C 1.47924 * 120.44818 * 180.02562 * 16 15 14 18 18 N 1.34774 * 120.00142 * 359.97438 * 17 16 15 19 19 O 1.21543 * 119.99873 * 179.97438 * 17 16 15 20 20 C 1.39867 * 119.10477 * 0.26857 * 16 15 14 21 21 C 1.38566 * 118.35690 * 359.46865 * 20 16 15 22 22 Cl 1.73598 * 120.42404 * 180.23637 * 21 20 16 23 23 H 1.09002 * 109.46586 * 185.27669 * 1 2 3 24 24 H 1.09001 * 109.47112 * 305.27661 * 1 2 3 25 25 H 1.08993 * 109.47088 * 65.27912 * 1 2 3 26 26 H 0.97003 * 120.00129 * 179.97438 * 6 5 3 27 27 H 1.08008 * 119.61920 * 179.97438 * 15 14 13 28 28 H 0.96994 * 120.00040 * 0.02562 * 18 17 16 29 29 H 0.97002 * 120.00274 * 179.72282 * 18 17 16 30 30 H 1.07998 * 120.82199 * 179.70161 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.1833 0.0000 4 1 2.9876 1.3221 0.6651 5 6 1.7620 2.2100 -0.8574 6 7 0.6912 2.0737 -1.6039 7 14 2.7681 3.7814 -0.9452 8 1 3.8162 3.6405 -1.9878 9 1 1.8787 4.9201 -1.2882 10 1 3.4092 4.0329 0.3703 11 6 2.1390 -1.1671 -0.0005 12 8 1.5321 -2.2194 -0.0488 13 6 3.6179 -1.1678 0.0579 14 7 4.2860 -0.0530 -0.2188 15 6 5.5979 -0.0045 -0.1797 16 6 6.3458 -1.1368 0.1575 17 6 7.8231 -1.0742 0.1998 18 7 8.4572 0.0797 -0.0883 19 8 8.4651 -2.0633 0.4944 20 6 5.6784 -2.3309 0.4492 21 6 4.2935 -2.3392 0.4024 22 17 3.4105 -3.7902 0.7608 23 1 -0.3632 -1.0234 0.0945 24 1 -0.3633 0.5935 0.8390 25 1 -0.3633 0.4297 -0.9334 26 1 0.4220 2.7892 -2.2010 27 1 6.1051 0.9204 -0.4116 28 1 7.9448 0.8691 -0.3230 29 1 9.4257 0.1218 -0.0566 30 1 6.2286 -3.2233 0.7083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116351987.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -14.141675 kcal Electronic energy + Delta-G solvation = -19845.406353 eV Core-core repulsion = 16474.909884 eV Total energy + Delta-G solvation = -3370.496469 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49222 -39.08391 -37.77468 -36.12884 -34.82207 -33.93789 -32.30923 -31.52629 -30.78252 -26.82146 -25.40475 -23.89769 -23.33462 -21.06543 -19.67834 -18.39226 -17.87731 -17.26021 -16.16435 -15.78077 -15.27933 -14.99732 -14.83929 -14.28109 -14.17971 -14.06590 -13.41141 -13.22869 -12.91413 -12.44424 -11.85072 -11.61625 -11.29131 -11.11188 -11.06687 -10.76776 -10.54298 -10.41119 -10.39150 -9.86799 -9.54774 -9.37740 -9.01704 -8.65407 -8.37512 -7.54681 -6.35931 -4.09287 0.50959 1.31095 2.45012 2.71667 3.09651 3.14967 3.18192 3.38674 3.60606 4.00689 4.26071 4.35648 4.61601 4.82639 4.87672 5.04898 5.25323 5.28804 5.62998 5.95124 6.17449 6.49154 6.62118 6.72326 6.85000 7.15582 7.27091 7.55533 7.85266 8.05147 8.13194 8.35289 8.98866 9.30639 9.76744 10.57841 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.007880 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.788297 B = 3552.436076 C = 5398.036531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.405 5.405 3 C -0.296 4.296 4 H 0.103 0.897 5 C 0.045 3.955 6 N -0.865 5.865 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.268 1.268 11 C 0.490 3.510 12 O -0.582 6.582 13 C 0.156 3.844 14 N -0.400 5.400 15 C 0.122 3.878 16 C -0.198 4.198 17 C 0.576 3.424 18 N -0.850 5.850 19 O -0.543 6.543 20 C -0.020 4.020 21 C -0.069 4.069 22 Cl -0.024 7.024 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.271 0.729 27 H 0.159 0.841 28 H 0.403 0.597 29 H 0.405 0.595 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.001 0.128 2.201 10.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.120 5.120 3 C -0.426 4.426 4 H 0.121 0.879 5 C -0.161 4.161 6 N -0.502 5.502 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.211 1.211 10 H -0.193 1.193 11 C 0.278 3.722 12 O -0.467 6.467 13 C 0.017 3.983 14 N -0.110 5.110 15 C -0.040 4.040 16 C -0.205 4.205 17 C 0.362 3.638 18 N -0.414 5.414 19 O -0.421 6.421 20 C -0.047 4.047 21 C -0.100 4.100 22 Cl 0.005 6.995 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.176 0.824 28 H 0.233 0.767 29 H 0.236 0.764 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.144 -0.359 2.054 9.378 hybrid contribution 1.143 0.634 -0.053 1.308 sum 10.286 0.275 2.001 10.483 Atomic orbital electron populations 1.21930 0.80762 0.99997 1.03716 1.43372 1.05732 1.04751 1.58189 1.19721 1.12892 0.89876 1.20069 0.87918 1.25608 0.95939 1.00053 0.94542 1.69675 1.22699 1.33728 1.24063 0.85937 0.79631 0.80171 0.78946 1.19968 1.21105 1.19274 1.17839 0.84588 0.85011 0.84739 1.90727 1.67672 1.30896 1.57411 1.21729 0.96723 0.87169 0.92711 1.68934 1.06947 1.24662 1.10498 1.23310 0.90672 0.96746 0.93249 1.20866 0.93809 0.96021 1.09815 1.18037 0.87122 0.82978 0.75704 1.43711 1.11377 1.13057 1.73265 1.90801 1.67794 1.35196 1.48312 1.21451 0.91535 0.98200 0.93519 1.21901 0.92354 0.90954 1.04753 1.98388 1.75367 1.33279 1.92436 0.92855 0.94000 0.88324 0.91824 0.82410 0.76725 0.76404 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.85 9.86 59.85 0.59 2.44 16 2 N -0.41 -10.15 2.92 -123.23 -0.36 -10.51 16 3 C -0.30 -7.27 7.35 -15.05 -0.11 -7.39 16 4 H 0.10 2.45 6.33 -52.49 -0.33 2.12 16 5 C 0.04 1.08 5.42 -17.44 -0.09 0.99 16 6 N -0.86 -21.99 10.88 55.51 0.60 -21.39 16 7 Si 0.93 18.66 29.56 -169.99 -5.02 13.64 16 8 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 9 H -0.29 -5.79 7.11 56.52 0.40 -5.38 16 10 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 11 C 0.49 12.02 7.52 -12.25 -0.09 11.93 16 12 O -0.58 -14.89 13.53 5.30 0.07 -14.82 16 13 C 0.16 3.32 6.56 -82.92 -0.54 2.78 16 14 N -0.40 -7.91 6.68 -9.47 -0.06 -7.98 16 15 C 0.12 1.85 10.71 -17.17 -0.18 1.67 16 16 C -0.20 -2.92 5.90 -104.73 -0.62 -3.54 16 17 C 0.58 7.68 8.05 -12.29 -0.10 7.58 16 18 N -0.85 -7.37 8.83 30.55 0.27 -7.10 16 19 O -0.54 -9.00 17.24 5.33 0.09 -8.91 16 20 C -0.02 -0.33 9.51 -38.85 -0.37 -0.70 16 21 C -0.07 -1.29 6.36 -38.97 -0.25 -1.54 16 22 Cl -0.02 -0.44 26.15 -51.86 -1.36 -1.80 16 23 H 0.05 1.22 6.93 -51.93 -0.36 0.86 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 2.47 5.95 -51.93 -0.31 2.16 16 26 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 27 H 0.16 1.72 6.41 -52.48 -0.34 1.39 16 28 H 0.40 2.58 6.89 -40.82 -0.28 2.30 16 29 H 0.40 2.76 8.93 -40.82 -0.36 2.40 16 30 H 0.15 2.24 7.72 -52.49 -0.41 1.84 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -30.63 279.93 -5.26 -35.89 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -1.95 Total: 4.54 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -1.77 Total: 14.22 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.45 Total: -46.97 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.16 Total: -23.73 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.36 Total: -1.80 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.63 -5.26 -35.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116351987.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.750 kcal (2) G-P(sol) polarization free energy of solvation -30.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds