Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38356 * 127.14640 * 2 1 4 4 C 1.39773 * 126.56646 * 0.02682 * 3 2 1 5 5 H 1.08001 * 120.00356 * 0.25948 * 4 3 2 6 6 C 1.40080 * 119.99905 * 180.26519 * 4 3 2 7 7 N 1.30818 * 120.00398 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99993 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47065 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47160 * 120.00117 * 8 6 4 11 11 H 1.48506 * 109.46961 * 239.99576 * 8 6 4 12 12 N 1.33104 * 106.86696 * 180.22399 * 3 2 1 13 13 N 1.28509 * 109.74749 * 359.77959 * 12 3 2 14 14 C 1.32387 * 110.20506 * 359.97438 * 13 12 3 15 15 S 1.76195 * 126.26077 * 179.97438 * 14 13 12 16 16 C 1.81000 * 99.99997 * 0.02869 * 15 14 13 17 17 C 1.50702 * 109.47009 * 180.02562 * 16 15 14 18 18 C 1.35346 * 123.77028 * 90.00027 * 17 16 15 19 19 S 1.72118 * 104.15248 * 179.97438 * 18 17 16 20 20 N 1.56508 * 95.88472 * 0.02562 * 19 18 17 21 21 N 1.27571 * 109.22644 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47446 * 270.16864 * 1 2 3 23 23 H 1.08993 * 109.47405 * 30.17421 * 1 2 3 24 24 H 1.09003 * 109.46504 * 150.17459 * 1 2 3 25 25 H 0.96996 * 120.00101 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47357 * 59.99999 * 16 15 14 27 27 H 1.09002 * 109.47191 * 299.99408 * 16 15 14 28 28 H 1.08000 * 127.91687 * 0.23942 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9085 2.4445 0.0005 5 1 0.8593 2.7006 0.0052 6 6 2.8765 3.4570 -0.0052 7 7 4.1474 3.1469 -0.0105 8 14 2.3526 5.2500 -0.0037 9 1 0.8700 5.3325 0.0032 10 1 2.8920 5.9224 1.2055 11 1 2.8797 5.9207 -1.2194 12 7 3.5490 0.6415 -0.0050 13 7 3.5371 -0.6435 -0.0033 14 6 2.2905 -1.0892 0.0033 15 16 1.7875 -2.7779 0.0073 16 6 3.4061 -3.5879 0.0007 17 6 3.2194 -5.0834 0.0023 18 6 3.1213 -5.8305 -1.1219 19 16 2.9237 -7.4391 -0.5423 20 7 2.9759 -7.0695 0.9776 21 7 3.1336 -5.8093 1.0984 22 1 -0.3634 0.0030 1.0276 23 1 -0.3634 0.8883 -0.5165 24 1 -0.3632 -0.8916 -0.5111 25 1 4.8177 3.8480 -0.0140 26 1 3.9651 -3.2902 0.8878 27 1 3.9569 -3.2920 -0.8922 28 1 3.1624 -5.4948 -2.1476 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118476028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = 118.490507 kcal Electronic energy + Delta-G solvation = -16631.985468 eV Core-core repulsion = 13744.329691 eV Total energy + Delta-G solvation = -2887.655777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.026 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.46368 -41.97719 -35.62931 -35.19457 -34.48734 -31.34361 -29.38716 -28.23867 -27.81289 -27.31706 -22.83043 -22.62559 -22.08721 -19.59926 -19.23417 -17.91910 -17.33473 -17.00377 -16.65773 -16.56532 -16.12450 -15.32849 -15.11139 -14.69024 -14.57932 -13.93500 -13.81358 -13.28678 -13.13571 -12.97048 -12.77814 -12.71387 -12.17295 -11.92781 -11.70568 -11.47067 -11.15561 -10.91527 -10.68827 -10.58723 -10.35404 -10.29282 -8.57950 -8.54532 -6.58784 -0.79207 0.05046 0.22967 0.68290 0.98170 1.18470 1.42655 1.49419 1.60624 1.60915 2.18876 2.44362 2.50387 2.85103 3.34070 3.62909 3.87867 4.07935 4.22658 4.44117 4.45023 4.62077 4.64797 4.87574 4.95771 5.32061 5.55847 6.02463 6.22365 6.69395 6.75844 6.91620 8.41133 8.63223 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.003448 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.409996 B = 8118.167939 C = 8421.375670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.521 5.521 3 C 0.317 3.683 4 C -0.469 4.469 5 H 0.104 0.896 6 C 0.028 3.972 7 N -0.787 5.787 8 Si 1.007 2.993 9 H -0.245 1.245 10 H -0.269 1.269 11 H -0.267 1.267 12 N -0.387 5.387 13 N -0.327 5.327 14 C 0.053 3.947 15 S 0.013 5.987 16 C -0.009 4.009 17 C 0.020 3.980 18 C -0.266 4.266 19 S 0.525 5.475 20 N -0.333 5.333 21 N -0.264 5.264 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.284 0.716 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -14.846 -5.573 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.222 5.222 3 C 0.071 3.929 4 C -0.509 4.509 5 H 0.122 0.878 6 C -0.193 4.193 7 N -0.412 5.412 8 Si 0.826 3.174 9 H -0.168 1.168 10 H -0.194 1.194 11 H -0.191 1.191 12 N -0.234 5.234 13 N -0.172 5.172 14 C -0.321 4.321 15 S 0.240 5.760 16 C -0.161 4.161 17 C -0.126 4.126 18 C -0.424 4.424 19 S 0.659 5.341 20 N -0.312 5.312 21 N -0.131 5.131 22 H 0.090 0.910 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.419 -16.890 -4.453 18.609 hybrid contribution 0.253 2.983 -0.355 3.014 sum -6.165 -13.907 -4.808 15.954 Atomic orbital electron populations 1.21860 0.75267 1.04574 1.03290 1.46355 1.08086 1.04341 1.63436 1.22063 0.85100 0.89936 0.95808 1.18652 0.96000 0.86411 1.49849 0.87825 1.26998 0.93934 1.06506 0.91855 1.70159 1.02403 1.36957 1.31723 0.84799 0.80148 0.73813 0.78657 1.16776 1.19378 1.19150 1.75319 1.17311 0.99107 1.31645 1.74402 1.17047 1.07155 1.18567 1.26306 0.91170 0.95300 1.19338 1.84334 1.09561 0.87106 1.95030 1.21518 0.97866 0.88507 1.08207 1.21385 1.05672 0.97127 0.88454 1.28642 1.06846 1.00143 1.06732 1.80998 1.47432 1.07374 0.98276 1.78546 1.23787 1.09910 1.18984 1.71240 1.15133 0.97698 1.29001 0.90993 0.89111 0.89009 0.90517 0.88990 0.86210 0.74886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.20 10.87 127.77 1.39 4.59 15 2 N -0.52 -24.96 3.26 -543.63 -1.77 -26.73 15 3 C 0.32 18.05 7.53 133.23 1.00 19.05 15 4 C -0.47 -24.90 9.04 23.09 0.21 -24.69 15 5 H 0.10 4.87 7.31 -2.91 -0.02 4.84 15 6 C 0.03 1.43 5.50 85.29 0.47 1.89 15 7 N -0.79 -44.49 11.94 21.85 0.26 -44.23 15 8 Si 1.01 37.48 29.56 68.60 2.03 39.51 15 9 H -0.24 -8.35 7.11 99.48 0.71 -7.64 15 10 H -0.27 -9.78 7.11 99.48 0.71 -9.07 15 11 H -0.27 -9.60 7.11 99.48 0.71 -8.89 15 12 N -0.39 -24.09 10.48 -55.02 -0.58 -24.67 15 13 N -0.33 -18.32 11.62 -56.18 -0.65 -18.97 15 14 C 0.05 2.51 8.09 179.18 1.45 3.96 15 15 S 0.01 0.45 21.77 -56.49 -1.23 -0.78 15 16 C -0.01 -0.27 5.70 71.24 0.41 0.13 15 17 C 0.02 0.53 6.14 41.90 0.26 0.78 15 18 C -0.27 -4.48 11.36 67.15 0.76 -3.71 15 19 S 0.52 7.56 23.40 -56.49 -1.32 6.24 15 20 N -0.33 -8.39 12.54 37.02 0.46 -7.93 15 21 N -0.26 -7.87 11.68 -51.24 -0.60 -8.47 15 22 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.09 2.90 7.54 -2.39 -0.02 2.88 15 24 H 0.09 2.66 7.85 -2.39 -0.02 2.64 15 25 H 0.28 14.46 8.30 -92.71 -0.77 13.69 15 26 H 0.09 3.33 8.14 -2.40 -0.02 3.31 15 27 H 0.12 3.62 8.14 -2.39 -0.02 3.60 15 28 H 0.23 2.26 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -77.92 285.25 3.76 -74.16 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.21 Total: 9.86 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.94 Total: 2.01 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -2.87 Total: -131.00 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: 8.01 SS G_CDS: -2.55 Total: 5.46 kcal Total: -77.92 3.76 -74.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118476028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.648 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds