Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00183 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99786 * 180.02562 * 11 10 9 14 14 C 1.46134 * 122.49959 * 359.71136 * 13 11 10 15 15 C 1.55698 * 109.35692 * 149.13303 * 14 13 11 16 16 S 1.84240 * 99.66737 * 40.67916 * 15 14 13 17 17 C 1.47059 * 122.49632 * 180.02562 * 13 11 10 18 18 H 1.08994 * 110.33806 * 302.91549 * 17 13 11 19 19 C 1.53002 * 110.33921 * 65.06209 * 17 13 11 20 20 F 1.39897 * 109.47360 * 59.99790 * 19 17 13 21 21 F 1.39900 * 109.46931 * 179.97438 * 19 17 13 22 22 F 1.39901 * 109.46993 * 299.99723 * 19 17 13 23 23 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 25 25 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 26 26 H 1.09001 * 109.47194 * 300.00036 * 10 9 7 27 27 H 1.09000 * 109.46968 * 59.99837 * 10 9 7 28 28 H 1.09002 * 109.46994 * 269.28681 * 14 13 11 29 29 H 1.08995 * 109.46932 * 29.22722 * 14 13 11 30 30 H 1.09006 * 111.54734 * 283.01851 * 15 14 13 31 31 H 1.08997 * 111.23439 * 158.22172 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0018 14 6 3.6258 -6.1980 -0.0043 15 6 4.0897 -7.4779 0.7512 16 16 2.8367 -8.6763 0.1281 17 6 1.4868 -7.4387 0.0019 18 1 0.8189 -7.5181 0.8596 19 6 0.7052 -7.6315 -1.2993 20 9 1.5858 -7.5756 -2.3849 21 9 0.0677 -8.8767 -1.2802 22 9 -0.2520 -6.6188 -1.4226 23 1 -0.4850 -0.8401 0.0004 24 1 0.6242 -2.5567 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8720 -3.6043 -0.8895 27 1 2.8720 -3.6043 0.8905 28 1 3.9838 -6.2297 -1.0334 29 1 4.0299 -5.3163 0.4930 30 1 4.0168 -7.3535 1.8317 31 1 5.0978 -7.7677 0.4549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119487705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = -184.641191 kcal Electronic energy + Delta-G solvation = -20936.572137 eV Core-core repulsion = 17122.409564 eV Total energy + Delta-G solvation = -3814.162573 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.06754 -47.64095 -47.45726 -39.94217 -36.58736 -33.96292 -31.71760 -31.10319 -29.16705 -25.41064 -24.05784 -23.45411 -21.75336 -19.61610 -18.69817 -18.59938 -17.83794 -17.21911 -16.80343 -16.44671 -15.88922 -15.03678 -14.57974 -14.45071 -14.32313 -13.97592 -13.74638 -13.67560 -13.62548 -13.46982 -13.43127 -13.05164 -12.85230 -12.30533 -12.24240 -12.12089 -11.61939 -10.89697 -10.83416 -10.24055 -10.19675 -10.01548 -9.61397 -9.18438 -8.62800 -8.39277 -8.35231 -6.38074 -4.09534 0.80184 1.45888 2.27037 2.51397 2.83506 3.41518 3.43663 3.60065 3.62720 3.92220 4.03079 4.32222 4.49242 4.53175 4.67667 4.85645 5.01536 5.11848 5.33759 5.39666 5.74716 5.87847 5.92360 6.50075 7.09002 7.39905 7.44641 8.05801 8.22437 8.42339 8.84077 9.64413 11.02769 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.004634 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.754612 B = 6041.481960 C = 6687.108433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.017 3.983 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.282 1.282 6 H -0.288 1.288 7 C -0.611 4.611 8 H 0.050 0.950 9 C 0.023 3.977 10 C -0.114 4.114 11 C 0.517 3.483 12 O -0.498 6.498 13 N -0.624 5.624 14 C 0.094 3.906 15 C -0.080 4.080 16 S -0.214 6.214 17 C 0.129 3.871 18 H 0.139 0.861 19 C 0.451 3.549 20 F -0.172 7.172 21 F -0.178 7.178 22 F -0.149 7.149 23 H 0.272 0.728 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.533 -17.731 0.839 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.898 3.102 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.649 4.649 8 H 0.068 0.932 9 C -0.014 4.014 10 C -0.154 4.154 11 C 0.307 3.693 12 O -0.370 6.370 13 N -0.364 5.364 14 C -0.030 4.030 15 C -0.229 4.229 16 S 0.013 5.987 17 C -0.088 4.088 18 H 0.157 0.843 19 C 0.393 3.607 20 F -0.153 7.153 21 F -0.160 7.160 22 F -0.130 7.130 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.664 -17.230 0.579 19.295 hybrid contribution 0.084 -0.788 0.055 0.794 sum 8.748 -18.018 0.634 20.040 Atomic orbital electron populations 1.70742 1.06932 1.31030 1.45637 1.25851 0.96537 1.02708 0.93697 0.83533 0.74872 0.75351 0.76428 1.21432 1.20721 1.21446 1.21968 0.94128 0.91816 1.56981 0.93195 1.19066 0.93798 0.91013 0.97565 1.21808 1.00512 0.90039 1.02998 1.21892 0.88744 0.84485 0.74196 1.90769 1.13808 1.86349 1.46031 1.48907 1.06513 1.03306 1.77700 1.22392 0.79506 0.98933 1.02147 1.25000 1.00457 0.93410 1.04022 1.88386 1.08664 1.14676 1.86942 1.24778 0.97947 0.87999 0.98045 0.84296 1.20538 0.79117 0.74623 0.86433 1.93198 1.68632 1.96045 1.57475 1.93191 1.82986 1.43058 1.96725 1.93395 1.64510 1.58930 1.96163 0.91710 0.96572 0.96509 0.89539 0.89570 0.89418 0.87088 0.87355 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 3 Si 1.07 24.80 29.90 -169.99 -5.08 19.72 16 4 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.61 -16.92 9.11 -34.44 -0.31 -17.24 16 8 H 0.05 1.31 7.74 -52.48 -0.41 0.90 16 9 C 0.02 0.59 3.57 -27.88 -0.10 0.49 16 10 C -0.11 -2.15 4.31 -27.88 -0.12 -2.27 16 11 C 0.52 9.38 7.40 -10.99 -0.08 9.30 16 12 O -0.50 -10.98 13.29 5.56 0.07 -10.91 16 13 N -0.62 -8.54 2.93 -167.29 -0.49 -9.03 16 14 C 0.09 0.87 6.27 -2.80 -0.02 0.86 16 15 C -0.08 -0.55 7.73 38.60 0.30 -0.25 16 16 S -0.21 -2.22 22.33 -107.50 -2.40 -4.62 16 17 C 0.13 1.70 3.22 -3.74 -0.01 1.69 16 18 H 0.14 1.77 8.14 -51.93 -0.42 1.35 16 19 C 0.45 6.79 2.84 37.16 0.11 6.90 16 20 F -0.17 -2.59 16.88 2.25 0.04 -2.56 16 21 F -0.18 -2.53 17.19 2.25 0.04 -2.49 16 22 F -0.15 -2.74 13.98 2.25 0.03 -2.71 16 23 H 0.27 8.58 7.22 -40.82 -0.29 8.29 16 24 H 0.02 0.44 7.97 -51.93 -0.41 0.03 16 25 H 0.02 0.47 7.97 -51.93 -0.41 0.06 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.44 7.57 -51.93 -0.39 1.05 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.11 0.89 6.71 -51.93 -0.35 0.55 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 287.26 15.07 4.33 4.33 Total: -1.00 -33.62 287.26 -6.22 -39.85 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -3.18 Total: -4.01 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.34 Total: -0.14 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.27 Total: -36.46 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 9 Polarization: -7.86 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.40 Total: -4.62 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.62 -6.22 -39.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119487705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.796 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds