Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47457 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47264 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00183 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99786 * 180.02562 * 11 10 9 14 14 C 1.46134 * 122.49959 * 359.71136 * 13 11 10 15 15 C 1.55698 * 109.35692 * 149.13303 * 14 13 11 16 16 S 1.84240 * 99.66737 * 40.67916 * 15 14 13 17 17 C 1.47059 * 122.49632 * 180.02562 * 13 11 10 18 18 H 1.08994 * 110.33806 * 302.91549 * 17 13 11 19 19 C 1.53002 * 110.33921 * 65.06209 * 17 13 11 20 20 F 1.39897 * 109.47360 * 59.99790 * 19 17 13 21 21 F 1.39900 * 109.46931 * 179.97438 * 19 17 13 22 22 F 1.39901 * 109.46993 * 299.99723 * 19 17 13 23 23 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 25 25 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 26 26 H 1.09001 * 109.47194 * 300.00036 * 10 9 7 27 27 H 1.09000 * 109.46968 * 59.99837 * 10 9 7 28 28 H 1.09002 * 109.46994 * 269.28681 * 14 13 11 29 29 H 1.08995 * 109.46932 * 29.22722 * 14 13 11 30 30 H 1.09006 * 111.54734 * 283.01851 * 15 14 13 31 31 H 1.08997 * 111.23439 * 158.22172 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1658 -6.1343 0.0018 14 6 3.6258 -6.1980 -0.0043 15 6 4.0897 -7.4779 0.7512 16 16 2.8367 -8.6763 0.1281 17 6 1.4868 -7.4387 0.0019 18 1 0.8189 -7.5181 0.8596 19 6 0.7052 -7.6315 -1.2993 20 9 1.5858 -7.5756 -2.3849 21 9 0.0677 -8.8767 -1.2802 22 9 -0.2520 -6.6188 -1.4226 23 1 -0.4850 -0.8401 0.0004 24 1 0.6242 -2.5567 0.8903 25 1 0.6247 -2.5571 -0.8896 26 1 2.8720 -3.6043 -0.8895 27 1 2.8720 -3.6043 0.8905 28 1 3.9838 -6.2297 -1.0334 29 1 4.0299 -5.3163 0.4930 30 1 4.0168 -7.3535 1.8317 31 1 5.0978 -7.7677 0.4549 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119487705.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = -206.723170 kcal Electronic energy + Delta-G solvation = -20937.529683 eV Core-core repulsion = 17122.409564 eV Total energy + Delta-G solvation = -3815.120119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.28677 -48.82621 -48.74667 -41.25400 -37.78759 -35.99640 -33.20137 -32.27583 -30.44533 -27.22963 -25.24228 -24.58338 -23.48429 -20.84246 -19.87207 -19.83140 -19.27390 -18.73644 -18.12136 -17.63210 -17.07466 -16.40737 -15.82636 -15.62977 -15.59146 -15.57591 -15.20043 -14.92936 -14.91276 -14.78347 -14.61783 -14.12950 -13.97144 -13.83201 -13.57120 -13.34125 -13.10798 -12.66029 -12.14732 -12.05519 -11.88024 -11.54169 -11.10937 -10.70755 -10.54225 -10.29622 -9.18695 -8.67721 -6.40344 -0.13311 0.79186 1.12022 1.32233 1.56393 1.57472 1.65981 1.83928 2.45349 2.61061 2.87050 3.09314 3.18758 3.26571 3.50389 3.75932 4.00622 4.19146 4.25099 4.35598 4.53111 4.72943 4.79132 4.89074 5.28552 5.34475 5.83997 5.92986 6.19371 6.51505 6.84462 7.45946 8.72158 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.004634 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.754612 B = 6041.481960 C = 6687.108433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.123 2.877 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.616 4.616 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.101 4.101 11 C 0.519 3.481 12 O -0.551 6.551 13 N -0.616 5.616 14 C 0.079 3.921 15 C -0.061 4.061 16 S -0.214 6.214 17 C 0.124 3.876 18 H 0.138 0.862 19 C 0.445 3.555 20 F -0.173 7.173 21 F -0.175 7.175 22 F -0.174 7.174 23 H 0.251 0.749 24 H -0.018 1.018 25 H -0.023 1.023 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.125 0.875 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.347 -18.289 1.417 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.242 4.242 3 Si 0.943 3.057 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.186 1.186 7 C -0.653 4.653 8 H 0.090 0.910 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.309 3.691 12 O -0.426 6.426 13 N -0.353 5.353 14 C -0.043 4.043 15 C -0.209 4.209 16 S 0.013 5.987 17 C -0.093 4.093 18 H 0.156 0.844 19 C 0.387 3.613 20 F -0.154 7.154 21 F -0.156 7.156 22 F -0.156 7.156 23 H 0.060 0.940 24 H 0.000 1.000 25 H -0.005 1.005 26 H 0.126 0.874 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.548 -17.857 1.160 21.856 hybrid contribution -1.042 -0.736 -0.140 1.284 sum 11.506 -18.593 1.021 21.889 Atomic orbital electron populations 1.70904 1.08493 1.29727 1.48748 1.27624 0.96442 1.07456 0.92653 0.82883 0.73986 0.70396 0.78405 1.18929 1.21731 1.18610 1.22463 0.95325 0.92400 1.55155 0.91019 1.18897 0.94410 0.93857 0.94104 1.21565 0.98966 0.88075 1.05461 1.21597 0.87971 0.85636 0.73931 1.90760 1.15958 1.87279 1.48623 1.48760 1.08399 1.02345 1.75803 1.22807 0.76524 1.01208 1.03732 1.25243 1.00656 0.90256 1.04703 1.88493 1.08568 1.14366 1.87302 1.24793 0.99289 0.88572 0.96609 0.84445 1.20891 0.78893 0.74126 0.87370 1.93185 1.68453 1.96035 1.57754 1.93188 1.83019 1.42652 1.96763 1.93348 1.65689 1.60170 1.96377 0.93983 0.99952 1.00502 0.87415 0.86478 0.88333 0.85065 0.85627 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.49 13.65 21.45 0.29 -60.20 16 2 C -0.05 -2.60 5.46 84.65 0.46 -2.14 16 3 Si 1.12 48.85 29.90 68.60 2.05 50.90 16 4 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.62 -33.91 9.11 25.60 0.23 -33.67 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 9 C 0.02 1.32 3.57 29.85 0.11 1.43 16 10 C -0.10 -3.71 4.31 29.85 0.13 -3.58 16 11 C 0.52 18.76 7.40 87.65 0.65 19.41 16 12 O -0.55 -25.42 13.29 -3.02 -0.04 -25.46 16 13 N -0.62 -15.81 2.93 -801.58 -2.35 -18.16 16 14 C 0.08 1.16 6.27 87.38 0.55 1.70 16 15 C -0.06 -0.54 7.73 72.91 0.56 0.02 16 16 S -0.21 -3.85 22.33 -56.49 -1.26 -5.11 16 17 C 0.12 3.15 3.22 86.27 0.28 3.42 16 18 H 0.14 3.50 8.14 -2.39 -0.02 3.48 16 19 C 0.45 13.48 2.84 71.98 0.20 13.68 16 20 F -0.17 -5.12 16.88 44.97 0.76 -4.36 16 21 F -0.17 -4.98 17.19 44.97 0.77 -4.21 16 22 F -0.17 -6.74 13.98 44.97 0.63 -6.11 16 23 H 0.25 16.80 7.22 -92.71 -0.67 16.13 16 24 H -0.02 -1.06 7.97 -2.39 -0.02 -1.08 16 25 H -0.02 -1.41 7.97 -2.39 -0.02 -1.43 16 26 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 27 H 0.12 3.55 7.57 -2.39 -0.02 3.54 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.13 1.46 6.71 -2.39 -0.02 1.44 16 30 H 0.13 0.81 8.14 -2.38 -0.02 0.80 16 31 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -77.71 287.26 5.29 -72.42 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.26 Total: -0.01 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 3.17 Total: 0.28 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.05 Total: -78.36 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.04 Total: -25.46 kcal Atomic # 9 Polarization: -16.84 SS G_CDS: 2.16 Total: -14.68 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.05 Total: 50.90 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.26 Total: -5.11 kcal Total: -77.71 5.29 -72.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119487705.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.298 kcal (2) G-P(sol) polarization free energy of solvation -77.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds