Wall clock time and date at job start Tue Mar 31 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99555 * 3 2 1 6 6 H 1.48497 * 109.47075 * 60.00162 * 3 2 1 7 7 C 1.37879 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47544 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47544 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99401 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00372 * 179.97438 * 11 10 9 14 14 C 1.46131 * 122.49548 * 0.02827 * 13 11 10 15 15 C 1.55407 * 109.52017 * 210.73747 * 14 13 11 16 16 S 1.84241 * 99.76368 * 319.64263 * 15 14 13 17 17 C 1.47058 * 122.50038 * 180.02562 * 13 11 10 18 18 H 1.08996 * 110.42723 * 57.03741 * 17 13 11 19 19 C 1.52998 * 110.33589 * 294.83754 * 17 13 11 20 20 F 1.39899 * 109.47291 * 302.98541 * 19 17 13 21 21 F 1.39901 * 109.47598 * 62.99148 * 19 17 13 22 22 F 1.39908 * 109.47127 * 182.98638 * 19 17 13 23 23 H 0.96997 * 120.00196 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46998 * 60.00193 * 9 7 2 25 25 H 1.08996 * 109.47157 * 300.00380 * 9 7 2 26 26 H 1.09003 * 109.47207 * 60.00160 * 10 9 7 27 27 H 1.09003 * 109.46973 * 300.00358 * 10 9 7 28 28 H 1.08996 * 109.46905 * 90.71438 * 14 13 11 29 29 H 1.08991 * 109.47281 * 330.76518 * 14 13 11 30 30 H 1.08997 * 111.34544 * 77.27905 * 15 14 13 31 31 H 1.09004 * 111.34584 * 202.00962 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 6 1.4916 -4.9672 0.0033 12 8 0.2787 -4.9671 0.0041 13 7 2.1653 -6.1345 0.0028 14 6 3.6253 -6.1982 0.0013 15 6 4.0883 -7.4788 -0.7475 16 16 2.8359 -8.6766 -0.1220 17 6 1.4862 -7.4388 0.0040 18 1 0.8167 -7.5199 -0.8522 19 6 0.7076 -7.6318 1.3068 20 9 1.5796 -7.5084 2.3939 21 9 -0.2942 -6.6597 1.3999 22 9 0.1253 -8.9039 1.3181 23 1 -0.4850 0.8400 -0.0004 24 1 0.6239 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8724 -3.6041 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 3.9887 -6.2266 1.0285 29 1 4.0268 -5.3183 -0.5012 30 1 4.0144 -7.3553 -1.8279 31 1 5.0967 -7.7685 -0.4519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119487706.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:43 Heat of formation + Delta-G solvation = -180.763683 kcal Electronic energy + Delta-G solvation = -20892.766166 eV Core-core repulsion = 17078.771734 eV Total energy + Delta-G solvation = -3813.994432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.00910 -47.58542 -47.39490 -39.84633 -36.49905 -33.63764 -31.69016 -31.12841 -29.20214 -25.79571 -24.03346 -23.45543 -21.49966 -19.46776 -18.63907 -18.52681 -17.76458 -17.13960 -16.56440 -16.36908 -15.68492 -14.90192 -14.50651 -14.42106 -14.34443 -14.25794 -13.91927 -13.61763 -13.56356 -13.38775 -13.23683 -12.90196 -12.74457 -12.27380 -12.18110 -12.06713 -11.30500 -11.00722 -10.79994 -10.59721 -10.08850 -9.80384 -9.40901 -9.15964 -9.10290 -8.39524 -8.34887 -6.02790 -4.08013 0.85806 1.50948 2.34476 2.58659 2.93048 3.28580 3.36030 3.38549 3.65942 3.99193 4.09362 4.37910 4.40790 4.56435 4.74269 4.91043 5.09398 5.19514 5.32654 5.39586 5.83643 6.00302 6.04879 6.64836 7.19760 7.65585 7.74103 7.97594 8.21903 8.37749 8.99687 9.56239 11.08136 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.004612 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.408947 B = 6069.652520 C = 6715.426406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.121 4.121 11 C 0.517 3.483 12 O -0.496 6.496 13 N -0.625 5.625 14 C 0.095 3.905 15 C -0.080 4.080 16 S -0.217 6.217 17 C 0.130 3.870 18 H 0.139 0.861 19 C 0.451 3.549 20 F -0.172 7.172 21 F -0.149 7.149 22 F -0.179 7.179 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -17.398 -0.847 19.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.161 4.161 11 C 0.307 3.693 12 O -0.366 6.366 13 N -0.365 5.365 14 C -0.029 4.029 15 C -0.229 4.229 16 S 0.011 5.989 17 C -0.087 4.087 18 H 0.157 0.843 19 C 0.393 3.607 20 F -0.154 7.154 21 F -0.130 7.130 22 F -0.160 7.160 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.231 -18.425 -0.583 20.188 hybrid contribution 0.259 1.890 -0.057 1.909 sum 8.490 -16.534 -0.640 18.598 Atomic orbital electron populations 1.69998 1.06089 1.26633 1.49905 1.25019 0.94819 0.99293 0.95159 0.86523 0.79962 0.83751 0.77652 1.19727 1.20980 1.20965 1.21190 0.92928 0.90798 1.51775 0.92484 1.18957 0.93144 0.89242 0.98877 1.21958 1.00820 0.90512 1.02767 1.21924 0.88787 0.84416 0.74216 1.90783 1.13763 1.86265 1.45836 1.48939 1.06431 1.03295 1.77832 1.22315 0.79635 0.98837 1.02149 1.24950 1.00436 0.93477 1.04049 1.88379 1.08781 1.14848 1.86899 1.24763 0.97892 0.88050 0.97984 0.84309 1.20538 0.79161 0.74523 0.86477 1.93195 1.69195 1.95601 1.57373 1.93393 1.61405 1.61832 1.96347 1.93190 1.85279 1.40773 1.96785 0.92892 0.95661 0.95590 0.89713 0.89734 0.89515 0.87069 0.87417 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 0.91 4.26 -27.89 -0.12 0.79 16 10 C -0.12 -2.26 4.31 -27.89 -0.12 -2.38 16 11 C 0.52 9.39 7.44 -10.99 -0.08 9.31 16 12 O -0.50 -11.03 13.34 5.55 0.07 -10.95 16 13 N -0.62 -8.57 2.89 -167.49 -0.48 -9.06 16 14 C 0.09 0.88 6.25 -2.96 -0.02 0.86 16 15 C -0.08 -0.56 7.72 38.44 0.30 -0.26 16 16 S -0.22 -2.26 22.33 -107.50 -2.40 -4.66 16 17 C 0.13 1.72 3.22 -3.74 -0.01 1.71 16 18 H 0.14 1.78 8.14 -51.93 -0.42 1.36 16 19 C 0.45 6.84 2.81 37.16 0.10 6.94 16 20 F -0.17 -2.62 16.92 2.25 0.04 -2.59 16 21 F -0.15 -2.75 14.13 2.25 0.03 -2.72 16 22 F -0.18 -2.55 17.11 2.25 0.04 -2.51 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.38 7.56 -51.93 -0.39 0.99 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.11 0.89 6.71 -51.93 -0.35 0.54 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -33.08 288.67 -6.23 -39.31 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -3.24 Total: -4.99 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.36 Total: 3.81 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.25 Total: -35.15 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.11 Total: -7.81 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -2.40 Total: -4.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.08 -6.23 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119487706.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.450 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds