Wall clock time and date at job start Tue Mar 31 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47059 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99555 * 3 2 1 6 6 H 1.48497 * 109.47075 * 60.00162 * 3 2 1 7 7 C 1.37879 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00271 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47544 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47544 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99401 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00372 * 179.97438 * 11 10 9 14 14 C 1.46131 * 122.49548 * 0.02827 * 13 11 10 15 15 C 1.55407 * 109.52017 * 210.73747 * 14 13 11 16 16 S 1.84241 * 99.76368 * 319.64263 * 15 14 13 17 17 C 1.47058 * 122.50038 * 180.02562 * 13 11 10 18 18 H 1.08996 * 110.42723 * 57.03741 * 17 13 11 19 19 C 1.52998 * 110.33589 * 294.83754 * 17 13 11 20 20 F 1.39899 * 109.47291 * 302.98541 * 19 17 13 21 21 F 1.39901 * 109.47598 * 62.99148 * 19 17 13 22 22 F 1.39908 * 109.47127 * 182.98638 * 19 17 13 23 23 H 0.96997 * 120.00196 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46998 * 60.00193 * 9 7 2 25 25 H 1.08996 * 109.47157 * 300.00380 * 9 7 2 26 26 H 1.09003 * 109.47207 * 60.00160 * 10 9 7 27 27 H 1.09003 * 109.46973 * 300.00358 * 10 9 7 28 28 H 1.08996 * 109.46905 * 90.71438 * 14 13 11 29 29 H 1.08991 * 109.47281 * 330.76518 * 14 13 11 30 30 H 1.08997 * 111.34544 * 77.27905 * 15 14 13 31 31 H 1.09004 * 111.34584 * 202.00962 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 6 1.4916 -4.9672 0.0033 12 8 0.2787 -4.9671 0.0041 13 7 2.1653 -6.1345 0.0028 14 6 3.6253 -6.1982 0.0013 15 6 4.0883 -7.4788 -0.7475 16 16 2.8359 -8.6766 -0.1220 17 6 1.4862 -7.4388 0.0040 18 1 0.8167 -7.5199 -0.8522 19 6 0.7076 -7.6318 1.3068 20 9 1.5796 -7.5084 2.3939 21 9 -0.2942 -6.6597 1.3999 22 9 0.1253 -8.9039 1.3181 23 1 -0.4850 0.8400 -0.0004 24 1 0.6239 -2.5575 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8724 -3.6041 0.8910 27 1 2.8711 -3.6048 -0.8890 28 1 3.9887 -6.2266 1.0285 29 1 4.0268 -5.3183 -0.5012 30 1 4.0144 -7.3553 -1.8279 31 1 5.0967 -7.7685 -0.4519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119487706.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:43 Heat of formation + Delta-G solvation = -202.405331 kcal Electronic energy + Delta-G solvation = -20893.704618 eV Core-core repulsion = 17078.771734 eV Total energy + Delta-G solvation = -3814.932884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.23627 -48.77806 -48.69374 -41.15451 -37.69966 -35.62042 -33.25266 -32.25869 -30.48060 -27.60654 -25.21271 -24.49835 -23.19605 -20.71199 -19.82401 -19.77210 -19.16912 -18.48450 -17.92991 -17.58962 -16.95604 -16.43645 -16.24175 -15.60707 -15.57668 -15.46085 -15.14477 -14.86777 -14.85553 -14.52517 -14.39203 -14.22032 -13.88812 -13.82357 -13.32171 -13.18112 -13.04725 -12.84969 -12.45049 -11.95405 -11.73015 -11.46564 -11.27678 -10.88747 -10.57135 -10.21837 -9.14912 -8.17256 -6.31063 -0.08223 0.84094 1.20038 1.39675 1.44956 1.45549 1.58427 1.64929 2.43673 2.50590 2.92398 3.14748 3.16957 3.33299 3.59934 3.83463 4.06791 4.27305 4.41609 4.50862 4.59192 4.78647 4.89340 5.02791 5.51008 5.61392 5.85060 5.94907 6.16595 6.85930 6.97013 7.39695 8.95684 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.004612 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.408947 B = 6069.652520 C = 6715.426406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.249 1.249 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.081 0.919 9 C 0.040 3.960 10 C -0.107 4.107 11 C 0.519 3.481 12 O -0.550 6.550 13 N -0.616 5.616 14 C 0.080 3.920 15 C -0.061 4.061 16 S -0.218 6.218 17 C 0.125 3.875 18 H 0.137 0.863 19 C 0.445 3.555 20 F -0.174 7.174 21 F -0.174 7.174 22 F -0.175 7.175 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.020 1.020 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 -17.829 -1.424 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.172 1.172 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.576 4.576 8 H 0.099 0.901 9 C 0.002 3.998 10 C -0.147 4.147 11 C 0.308 3.692 12 O -0.426 6.426 13 N -0.354 5.354 14 C -0.042 4.042 15 C -0.209 4.209 16 S 0.009 5.991 17 C -0.092 4.092 18 H 0.155 0.845 19 C 0.387 3.613 20 F -0.155 7.155 21 F -0.156 7.156 22 F -0.157 7.157 23 H 0.070 0.930 24 H 0.004 0.996 25 H -0.002 1.002 26 H 0.126 0.874 27 H 0.136 0.864 28 H 0.116 0.884 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.103 -18.906 -1.163 22.478 hybrid contribution -0.879 1.914 0.137 2.110 sum 11.224 -16.992 -1.026 20.390 Atomic orbital electron populations 1.70182 1.08397 1.27707 1.51637 1.26119 0.95635 1.03948 0.94726 0.85293 0.79515 0.78208 0.77348 1.17227 1.20807 1.21042 1.21718 0.94126 0.91277 1.50474 0.90133 1.18733 0.93757 0.92459 0.94844 1.21697 0.99238 0.88311 1.05430 1.21680 0.88007 0.85628 0.73856 1.90771 1.16022 1.87234 1.48531 1.48787 1.08342 1.02325 1.75952 1.22732 0.76614 1.01126 1.03751 1.25195 1.00615 0.90334 1.04742 1.88485 1.08717 1.14578 1.87270 1.24770 0.99230 0.88667 0.96518 0.84495 1.20896 0.78874 0.74086 0.87418 1.93180 1.69028 1.95607 1.57678 1.93346 1.62680 1.62992 1.96550 1.93188 1.85305 1.40341 1.96827 0.92950 0.99630 1.00163 0.87376 0.86411 0.88414 0.84927 0.85684 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.29 21.45 0.28 -58.40 16 2 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 3 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.04 2.11 4.26 29.85 0.13 2.24 16 10 C -0.11 -3.89 4.31 29.85 0.13 -3.77 16 11 C 0.52 18.83 7.44 87.66 0.65 19.48 16 12 O -0.55 -25.73 13.34 -3.04 -0.04 -25.77 16 13 N -0.62 -15.91 2.89 -802.21 -2.31 -18.23 16 14 C 0.08 1.16 6.25 87.28 0.55 1.71 16 15 C -0.06 -0.55 7.72 72.81 0.56 0.01 16 16 S -0.22 -3.96 22.33 -56.49 -1.26 -5.22 16 17 C 0.13 3.20 3.22 86.27 0.28 3.48 16 18 H 0.14 3.52 8.14 -2.39 -0.02 3.51 16 19 C 0.45 13.61 2.81 71.98 0.20 13.81 16 20 F -0.17 -5.21 16.92 44.97 0.76 -4.45 16 21 F -0.17 -6.78 14.13 44.97 0.64 -6.15 16 22 F -0.18 -5.02 17.11 44.97 0.77 -4.25 16 23 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 24 H -0.01 -0.89 8.10 -2.38 -0.02 -0.91 16 25 H -0.02 -1.24 8.10 -2.39 -0.02 -1.25 16 26 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 27 H 0.12 3.48 7.56 -2.39 -0.02 3.47 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.13 1.44 6.71 -2.39 -0.02 1.42 16 30 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -76.71 288.67 5.21 -71.50 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: 1.16 Total: -2.14 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 3.19 Total: 8.06 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -2.03 Total: -76.63 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.04 Total: -25.77 kcal Atomic # 9 Polarization: -17.02 SS G_CDS: 2.17 Total: -14.85 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.26 Total: -5.22 kcal Total: -76.71 5.21 -71.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119487706.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.903 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds