Wall clock time and date at job start Tue Mar 31 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47003 * 300.00382 * 3 2 1 6 6 H 1.48500 * 109.46787 * 60.00231 * 3 2 1 7 7 C 1.38798 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00252 * 359.97438 * 7 2 1 10 10 C 1.81008 * 99.99946 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46759 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00521 * 359.72922 * 11 10 9 13 13 N 1.34784 * 119.99774 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99893 * 179.72962 * 13 11 10 15 15 C 1.50699 * 109.46700 * 180.02562 * 14 13 11 16 16 C 1.38291 * 119.99957 * 259.72389 * 15 14 13 17 17 C 1.38202 * 120.14940 * 179.72539 * 16 15 14 18 18 C 1.38292 * 120.14538 * 0.55107 * 17 16 15 19 19 C 1.38520 * 119.99710 * 359.72445 * 18 17 16 20 20 O 1.35997 * 120.07474 * 180.02562 * 19 18 17 21 21 C 1.38520 * 120.00413 * 79.99729 * 15 14 13 22 22 O 1.35997 * 120.07257 * 359.97438 * 21 15 14 23 23 H 0.97000 * 119.99806 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46816 * 60.00508 * 10 9 7 25 25 H 1.08993 * 109.47387 * 300.00147 * 10 9 7 26 26 H 0.97005 * 119.99846 * 359.72750 * 13 11 10 27 27 H 1.08998 * 109.47134 * 299.99552 * 14 13 11 28 28 H 1.08994 * 109.47397 * 59.99843 * 14 13 11 29 29 H 1.08005 * 119.92263 * 359.97438 * 16 15 14 30 30 H 1.07998 * 119.93317 * 180.25194 * 17 16 15 31 31 H 1.08000 * 119.99763 * 179.74887 * 18 17 16 32 32 H 0.96695 * 113.99966 * 269.98294 * 20 19 18 33 33 H 0.96698 * 114.00114 * 89.99642 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0021 11 6 1.9873 -5.3027 -0.0017 12 8 0.7911 -5.5023 0.0045 13 7 2.8441 -6.3432 -0.0022 14 6 2.3303 -7.7151 0.0042 15 6 3.4848 -8.6838 0.0028 16 6 3.8726 -9.2956 -1.1752 17 6 4.9345 -10.1801 -1.1810 18 6 5.6068 -10.4659 -0.0068 19 6 5.2198 -9.8608 1.1777 20 8 5.8802 -10.1404 2.3332 21 6 4.1539 -8.9656 1.1825 22 8 3.7706 -8.3686 2.3427 23 1 -0.4850 0.8401 0.0004 24 1 3.1251 -3.7318 0.8875 25 1 3.1238 -3.7310 -0.8924 26 1 3.8009 -6.1836 -0.0068 27 1 1.7256 -7.8725 0.8973 28 1 1.7179 -7.8779 -0.8826 29 1 3.3469 -9.0787 -2.0934 30 1 5.2370 -10.6529 -2.1037 31 1 6.4337 -11.1606 -0.0134 32 1 5.5127 -10.8871 2.8254 33 1 3.1009 -8.8616 2.8362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123890334.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:07 Heat of formation + Delta-G solvation = -98.561061 kcal Electronic energy + Delta-G solvation = -18804.958165 eV Core-core repulsion = 15536.385047 eV Total energy + Delta-G solvation = -3268.573118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69831 -39.00934 -37.38089 -36.92397 -34.51227 -32.39846 -31.39469 -29.55296 -29.14576 -25.96025 -25.35112 -22.91132 -21.94001 -20.33661 -19.01333 -18.20633 -17.77704 -16.73342 -16.53389 -16.25005 -15.63253 -15.03976 -14.96063 -14.77606 -14.70515 -13.90174 -13.59430 -13.23218 -12.92905 -12.75206 -12.64925 -12.39096 -12.15140 -11.72741 -11.60207 -11.04436 -10.98651 -10.73624 -10.49531 -9.77990 -9.57982 -9.05823 -9.04591 -8.94023 -8.83750 -8.19775 -6.46422 -6.18958 -3.88953 0.71986 0.77054 2.96039 3.14334 3.20080 3.24026 3.31855 3.40304 3.67786 3.79693 3.90926 4.23390 4.33874 4.55340 4.87721 4.89275 5.16267 5.16562 5.22428 5.34489 5.48643 5.60877 5.78785 5.85168 5.93154 5.95354 6.09920 6.20272 6.28649 6.62539 7.05468 7.45029 7.63214 7.75769 8.38750 8.64902 9.26639 10.88575 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.003044 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.131418 B = 9195.911705 C = 9412.965031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.520 6.520 13 N -0.729 5.729 14 C 0.170 3.830 15 C -0.116 4.116 16 C -0.093 4.093 17 C -0.114 4.114 18 C -0.127 4.127 19 C 0.076 3.924 20 O -0.487 6.487 21 C 0.100 3.900 22 O -0.480 6.480 23 H 0.267 0.733 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.400 0.600 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.386 0.614 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.735 -24.077 0.441 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.395 6.395 13 N -0.384 5.384 14 C 0.046 3.954 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.132 4.132 18 C -0.146 4.146 19 C 0.030 3.970 20 O -0.297 6.297 21 C 0.054 3.946 22 O -0.289 6.289 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.234 0.766 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.242 0.758 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 9.306 -23.390 0.133 25.173 hybrid contribution 1.901 0.530 0.372 2.008 sum 11.207 -22.860 0.505 25.464 Atomic orbital electron populations 1.70035 1.05941 1.27296 1.47083 1.24996 0.95035 0.99034 0.94573 0.86109 0.79614 0.81862 0.77864 1.19605 1.20592 1.20575 1.22922 0.94979 0.91658 1.58679 0.90868 1.85358 1.05011 0.96327 1.96713 1.23526 1.06523 0.95256 1.05004 1.20308 0.86442 0.86220 0.75024 1.90695 1.15335 1.85582 1.47872 1.45972 1.10110 1.04629 1.77675 1.19920 0.92522 0.79944 1.02967 1.20281 0.98482 0.99832 0.93123 1.21129 0.96793 0.95866 0.97415 1.21081 0.95722 0.98448 0.97994 1.21417 1.00625 1.00417 0.92093 1.18804 0.93960 0.97118 0.87073 1.84942 1.55895 1.54923 1.33916 1.18703 0.94141 0.94967 0.86808 1.84968 1.61974 1.49093 1.32898 0.92276 0.89140 0.89241 0.76647 0.90802 0.90610 0.84817 0.85011 0.84941 0.75813 0.75545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 8 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.21 6.16 36.00 0.22 -2.98 16 11 C 0.53 10.35 7.85 -10.98 -0.09 10.26 16 12 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 13 N -0.73 -10.59 5.55 -61.48 -0.34 -10.93 16 14 C 0.17 2.06 5.46 -5.19 -0.03 2.03 16 15 C -0.12 -1.14 5.26 -104.50 -0.55 -1.69 16 16 C -0.09 -0.77 9.66 -39.57 -0.38 -1.15 16 17 C -0.11 -0.80 10.04 -39.57 -0.40 -1.20 16 18 C -0.13 -0.96 9.98 -39.46 -0.39 -1.35 16 19 C 0.08 0.69 6.72 -39.12 -0.26 0.42 16 20 O -0.49 -4.13 13.29 -34.21 -0.45 -4.59 16 21 C 0.10 1.00 6.69 -39.12 -0.26 0.73 16 22 O -0.48 -4.94 12.52 -34.21 -0.43 -5.37 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 25 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 26 H 0.40 5.15 8.46 -40.82 -0.35 4.80 16 27 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 28 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 29 H 0.13 0.93 8.03 -52.48 -0.42 0.51 16 30 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.39 1.27 9.06 45.56 0.41 1.68 16 33 H 0.39 2.23 9.06 45.56 0.41 2.64 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -37.63 313.69 -6.85 -44.48 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -2.00 Total: 4.64 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.94 Total: -8.13 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.39 Total: -36.67 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.79 Total: -21.87 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -37.63 -6.85 -44.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123890334.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.077 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds