Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99294 * 2 1 4 4 C 1.38203 * 120.01480 * 180.27390 * 3 2 1 5 5 C 1.38344 * 119.98382 * 359.47321 * 4 3 2 6 6 Br 1.89095 * 120.00755 * 180.27640 * 5 4 3 7 7 C 1.38303 * 119.98410 * 0.25064 * 5 4 3 8 8 C 1.50699 * 120.00950 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.46979 * 274.07329 * 8 7 5 10 10 C 1.46498 * 119.99689 * 276.27565 * 9 8 7 11 11 C 1.36941 * 119.99662 * 96.27255 * 9 8 7 12 12 H 1.07995 * 120.00258 * 323.14220 * 11 9 8 13 13 C 1.38814 * 119.99141 * 143.14733 * 11 9 8 14 14 N 1.31625 * 119.99736 * 159.91242 * 13 11 9 15 15 Si 1.86798 * 120.00452 * 339.90760 * 13 11 9 16 16 H 1.48500 * 109.47161 * 93.07394 * 15 13 11 17 17 H 1.48497 * 109.47290 * 213.07516 * 15 13 11 18 18 H 1.48498 * 109.46872 * 333.07541 * 15 13 11 19 19 C 1.38228 * 119.99067 * 179.72144 * 2 1 3 20 20 H 1.08992 * 109.47217 * 270.27506 * 1 2 3 21 21 H 1.08996 * 109.46637 * 30.27934 * 1 2 3 22 22 H 1.09009 * 109.46914 * 150.27758 * 1 2 3 23 23 H 1.08002 * 119.99504 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.00419 * 179.74551 * 4 3 2 25 25 H 1.09010 * 109.46922 * 34.06819 * 8 7 5 26 26 H 1.08999 * 109.47672 * 154.07185 * 8 7 5 27 27 H 1.08998 * 109.47262 * 84.39771 * 10 9 8 28 28 H 1.09003 * 109.46978 * 204.39042 * 10 9 8 29 29 H 1.08992 * 109.47106 * 324.39085 * 10 9 8 30 30 H 0.97000 * 120.00046 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.99039 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1974 0.0000 4 6 3.5801 1.1980 -0.0057 5 6 4.2720 0.0000 -0.0004 6 35 6.1630 0.0000 -0.0004 7 6 3.5803 -1.1977 0.0053 8 6 4.3334 -2.5030 0.0117 9 7 4.6625 -2.8836 -1.3642 10 6 3.6748 -3.5882 -2.1854 11 6 5.8932 -2.5805 -1.8827 12 1 6.3743 -1.6493 -1.6226 13 6 6.5221 -3.4704 -2.7426 14 7 7.4795 -3.0485 -3.5413 15 14 6.0099 -5.2666 -2.7664 16 1 4.9768 -5.4730 -3.8130 17 1 7.1920 -6.1147 -3.0638 18 1 5.4535 -5.6402 -1.4412 19 6 2.1979 -1.1972 0.0058 20 1 -0.3633 0.0049 1.0276 21 1 -0.3632 0.8875 -0.5182 22 1 -0.3633 -0.8925 -0.5096 23 1 1.6579 2.1326 -0.0004 24 1 4.1198 2.1334 -0.0099 25 1 5.2524 -2.3894 0.5869 26 1 3.7145 -3.2774 0.4647 27 1 3.0033 -2.8644 -2.6471 28 1 4.1869 -4.1558 -2.9624 29 1 3.0996 -4.2687 -1.5577 30 1 7.9193 -3.6704 -4.1419 31 1 1.6576 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137385000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = 53.376732 kcal Electronic energy + Delta-G solvation = -14895.682625 eV Core-core repulsion = 12417.226632 eV Total energy + Delta-G solvation = -2478.455993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.22742 -35.81774 -33.09616 -31.90461 -30.67323 -29.93477 -26.88212 -25.94450 -25.46680 -22.25483 -21.40836 -19.73310 -16.81507 -15.98797 -15.41527 -15.18229 -14.68500 -14.10901 -13.56575 -13.31913 -12.94964 -12.66515 -12.29904 -12.24641 -12.20419 -12.04789 -11.31504 -10.99692 -10.81909 -10.67103 -10.51044 -10.25941 -9.79282 -9.66770 -8.83275 -8.61947 -8.38315 -7.99051 -6.75677 -5.85323 -3.30507 1.45585 1.65131 2.29412 3.35612 3.51856 3.56372 3.90646 4.61305 4.97752 5.00144 5.18120 5.26303 5.39342 5.46495 5.57476 5.60030 5.80436 5.84712 6.02924 6.16172 6.25191 6.28025 6.49094 6.51466 6.66612 6.73357 6.77758 6.90200 7.17510 8.14268 8.54183 9.09825 9.81826 10.17783 11.28283 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.008834 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.215430 B = 3168.923967 C = 4294.333316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.082 4.082 3 C -0.131 4.131 4 C -0.094 4.094 5 C -0.079 4.079 6 Br -0.033 7.033 7 C -0.052 4.052 8 C 0.171 3.829 9 N -0.598 5.598 10 C 0.108 3.892 11 C -0.276 4.276 12 H 0.110 0.890 13 C 0.031 3.969 14 N -0.904 5.904 15 Si 0.878 3.122 16 H -0.289 1.289 17 H -0.305 1.305 18 H -0.272 1.272 19 C -0.112 4.112 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.013 0.987 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 7.290 9.247 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.114 4.114 5 C -0.159 4.159 6 Br 0.054 6.946 7 C -0.057 4.057 8 C 0.044 3.956 9 N -0.321 5.321 10 C -0.036 4.036 11 C -0.404 4.404 12 H 0.127 0.873 13 C -0.168 4.168 14 N -0.546 5.546 15 Si 0.710 3.290 16 H -0.218 1.218 17 H -0.233 1.233 18 H -0.197 1.197 19 C -0.132 4.132 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.414 7.214 9.108 14.954 hybrid contribution -0.703 -1.030 -0.333 1.291 sum -10.117 6.184 8.775 14.752 Atomic orbital electron populations 1.20762 0.91400 1.02633 1.01991 1.19938 0.95866 0.93291 0.99140 1.20842 0.93473 0.97416 1.03279 1.21034 0.94253 0.96620 0.99475 1.21759 0.91263 0.95469 1.07390 1.96699 1.02090 1.98823 1.97017 1.21009 0.93930 0.96914 0.93845 1.20058 0.97703 0.89647 0.88197 1.44025 1.12809 1.67332 1.07911 1.21389 0.92438 0.94932 0.94888 1.19611 0.93007 1.03103 1.24705 0.87300 1.25495 0.96019 0.97358 0.97923 1.69845 1.27230 1.34447 1.23121 0.86970 0.76141 0.87933 0.78006 1.21764 1.23297 1.19700 1.20877 0.93140 0.97397 1.01752 0.91380 0.91745 0.91593 0.86084 0.85711 0.90295 0.93624 0.96865 0.93051 0.95607 0.92935 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 16 2 C -0.08 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.13 -1.79 9.70 -39.59 -0.38 -2.18 16 4 C -0.09 -1.45 9.79 -39.56 -0.39 -1.84 16 5 C -0.08 -1.43 6.22 -39.52 -0.25 -1.68 16 6 Br -0.03 -0.63 28.70 -68.01 -1.95 -2.58 16 7 C -0.05 -0.96 5.45 -104.60 -0.57 -1.53 16 8 C 0.17 3.46 5.38 -5.19 -0.03 3.43 16 9 N -0.60 -14.41 2.49 -182.50 -0.46 -14.86 16 10 C 0.11 2.42 9.33 59.85 0.56 2.97 16 11 C -0.28 -7.67 9.64 -15.06 -0.15 -7.81 16 12 H 0.11 3.09 4.79 -52.49 -0.25 2.84 16 13 C 0.03 0.91 5.32 -17.43 -0.09 0.82 16 14 N -0.90 -27.94 13.97 55.49 0.78 -27.16 16 15 Si 0.88 22.60 24.93 -169.99 -4.24 18.36 16 16 H -0.29 -7.26 6.59 56.52 0.37 -6.89 16 17 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.11 -1.77 9.34 -39.59 -0.37 -2.14 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 22 H 0.07 0.64 8.09 -51.92 -0.42 0.22 16 23 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 24 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 25 H 0.08 1.64 6.69 -51.92 -0.35 1.29 16 26 H 0.05 0.83 7.94 -51.93 -0.41 0.42 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 1.24 3.23 -51.93 -0.17 1.08 16 29 H 0.03 0.50 8.02 -51.93 -0.42 0.08 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 272.57 15.07 4.11 4.11 Total: -1.00 -31.18 272.57 -7.39 -38.58 By element: Atomic # 1 Polarization: -0.27 SS G_CDS: -3.71 Total: -3.98 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.92 Total: -12.46 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.32 Total: -42.02 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.24 Total: 18.36 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -1.95 Total: -2.58 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.18 -7.39 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137385000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.953 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds