Wall clock time and date at job start Tue Mar 31 2020 05:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99294 * 2 1 4 4 C 1.38203 * 120.01480 * 180.27390 * 3 2 1 5 5 C 1.38344 * 119.98382 * 359.47321 * 4 3 2 6 6 Br 1.89095 * 120.00755 * 180.27640 * 5 4 3 7 7 C 1.38303 * 119.98410 * 0.25064 * 5 4 3 8 8 C 1.50699 * 120.00950 * 180.02562 * 7 5 4 9 9 N 1.46504 * 109.46979 * 274.07329 * 8 7 5 10 10 C 1.46498 * 119.99689 * 276.27565 * 9 8 7 11 11 C 1.36941 * 119.99662 * 96.27255 * 9 8 7 12 12 H 1.07995 * 120.00258 * 323.14220 * 11 9 8 13 13 C 1.38814 * 119.99141 * 143.14733 * 11 9 8 14 14 N 1.31625 * 119.99736 * 159.91242 * 13 11 9 15 15 Si 1.86798 * 120.00452 * 339.90760 * 13 11 9 16 16 H 1.48500 * 109.47161 * 93.07394 * 15 13 11 17 17 H 1.48497 * 109.47290 * 213.07516 * 15 13 11 18 18 H 1.48498 * 109.46872 * 333.07541 * 15 13 11 19 19 C 1.38228 * 119.99067 * 179.72144 * 2 1 3 20 20 H 1.08992 * 109.47217 * 270.27506 * 1 2 3 21 21 H 1.08996 * 109.46637 * 30.27934 * 1 2 3 22 22 H 1.09009 * 109.46914 * 150.27758 * 1 2 3 23 23 H 1.08002 * 119.99504 * 359.97438 * 3 2 1 24 24 H 1.07996 * 120.00419 * 179.74551 * 4 3 2 25 25 H 1.09010 * 109.46922 * 34.06819 * 8 7 5 26 26 H 1.08999 * 109.47672 * 154.07185 * 8 7 5 27 27 H 1.08998 * 109.47262 * 84.39771 * 10 9 8 28 28 H 1.09003 * 109.46978 * 204.39042 * 10 9 8 29 29 H 1.08992 * 109.47106 * 324.39085 * 10 9 8 30 30 H 0.97000 * 120.00046 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.99039 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1974 0.0000 4 6 3.5801 1.1980 -0.0057 5 6 4.2720 0.0000 -0.0004 6 35 6.1630 0.0000 -0.0004 7 6 3.5803 -1.1977 0.0053 8 6 4.3334 -2.5030 0.0117 9 7 4.6625 -2.8836 -1.3642 10 6 3.6748 -3.5882 -2.1854 11 6 5.8932 -2.5805 -1.8827 12 1 6.3743 -1.6493 -1.6226 13 6 6.5221 -3.4704 -2.7426 14 7 7.4795 -3.0485 -3.5413 15 14 6.0099 -5.2666 -2.7664 16 1 4.9768 -5.4730 -3.8130 17 1 7.1920 -6.1147 -3.0638 18 1 5.4535 -5.6402 -1.4412 19 6 2.1979 -1.1972 0.0058 20 1 -0.3633 0.0049 1.0276 21 1 -0.3632 0.8875 -0.5182 22 1 -0.3633 -0.8925 -0.5096 23 1 1.6579 2.1326 -0.0004 24 1 4.1198 2.1334 -0.0099 25 1 5.2524 -2.3894 0.5869 26 1 3.7145 -3.2774 0.4647 27 1 3.0033 -2.8644 -2.6471 28 1 4.1869 -4.1558 -2.9624 29 1 3.0996 -4.2687 -1.5577 30 1 7.9193 -3.6704 -4.1419 31 1 1.6576 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137385000.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:44 Heat of formation + Delta-G solvation = 35.258646 kcal Electronic energy + Delta-G solvation = -14896.468284 eV Core-core repulsion = 12417.226632 eV Total energy + Delta-G solvation = -2479.241652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45272 -37.55493 -34.40525 -33.67876 -32.24410 -31.19392 -28.38203 -27.47611 -26.96266 -23.76727 -22.86009 -21.09273 -18.81303 -17.30103 -17.17311 -16.58105 -15.95420 -15.81822 -14.80450 -14.63610 -14.55340 -14.25041 -13.95681 -13.78892 -13.41226 -13.14288 -12.89467 -12.61498 -12.41171 -12.12353 -12.05919 -11.86743 -11.63974 -11.25812 -10.62640 -10.40774 -9.74962 -9.30900 -8.67942 -8.03418 -5.45777 0.24955 0.44184 0.95058 1.31850 1.43729 1.53692 2.50465 2.69371 3.19993 3.58463 3.88179 3.96775 4.01993 4.37005 4.43230 4.54629 4.63902 4.75447 4.79270 4.82733 4.91356 4.96719 5.03617 5.15607 5.24469 5.36012 5.56329 5.65725 6.03289 6.06337 6.47240 7.06668 7.72670 8.12007 9.12820 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.019573 B = 0.008834 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.215430 B = 3168.923967 C = 4294.333316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.103 4.103 6 Br -0.060 7.060 7 C -0.075 4.075 8 C 0.171 3.829 9 N -0.613 5.613 10 C 0.107 3.893 11 C -0.260 4.260 12 H 0.096 0.904 13 C -0.031 4.031 14 N -0.955 5.955 15 Si 0.938 3.062 16 H -0.280 1.280 17 H -0.317 1.317 18 H -0.260 1.260 19 C -0.117 4.117 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.157 0.843 24 H 0.138 0.862 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.020 0.980 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.257 0.743 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 7.521 10.217 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.143 4.143 4 C -0.121 4.121 5 C -0.183 4.183 6 Br 0.026 6.974 7 C -0.080 4.080 8 C 0.046 3.954 9 N -0.336 5.336 10 C -0.037 4.037 11 C -0.390 4.390 12 H 0.113 0.887 13 C -0.226 4.226 14 N -0.601 5.601 15 Si 0.769 3.231 16 H -0.207 1.207 17 H -0.246 1.246 18 H -0.184 1.184 19 C -0.137 4.137 20 H 0.105 0.895 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.174 0.826 24 H 0.156 0.844 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.836 7.448 10.117 17.960 hybrid contribution 0.199 -0.950 -0.541 1.111 sum -12.637 6.498 9.576 17.135 Atomic orbital electron populations 1.20841 0.88365 1.03818 1.03525 1.20396 0.98006 0.92448 0.96843 1.21290 0.92688 0.99088 1.01214 1.21294 0.95386 0.96209 0.99165 1.21914 0.89985 0.96790 1.09641 1.96660 1.04722 1.98839 1.97183 1.20814 0.95071 0.95680 0.96404 1.20103 0.97867 0.91460 0.86009 1.44154 1.11965 1.67788 1.09719 1.21420 0.92098 0.95325 0.94865 1.19794 0.93976 1.02393 1.22862 0.88675 1.26094 0.96817 1.01091 0.98552 1.69977 1.29709 1.35460 1.24984 0.85981 0.75413 0.83143 0.78611 1.20739 1.24624 1.18438 1.21106 0.92045 0.99140 1.01396 0.89508 0.90087 0.90977 0.82564 0.84407 0.91824 0.91204 0.96198 0.95082 0.92284 0.93389 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 10.01 71.24 0.71 -0.95 16 2 C -0.08 -1.80 5.88 -19.86 -0.12 -1.91 16 3 C -0.12 -2.92 9.70 22.27 0.22 -2.71 16 4 C -0.10 -2.93 9.79 22.29 0.22 -2.71 16 5 C -0.10 -3.69 6.22 22.31 0.14 -3.55 16 6 Br -0.06 -2.37 28.70 -20.37 -0.58 -2.95 16 7 C -0.08 -2.66 5.45 -19.85 -0.11 -2.76 16 8 C 0.17 6.73 5.38 85.63 0.46 7.19 16 9 N -0.61 -28.86 2.49 -731.30 -1.82 -30.68 16 10 C 0.11 4.54 9.33 127.77 1.19 5.73 16 11 C -0.26 -14.62 9.64 84.03 0.81 -13.81 16 12 H 0.10 5.55 4.79 -2.91 -0.01 5.53 16 13 C -0.03 -1.84 5.32 84.86 0.45 -1.39 16 14 N -0.96 -60.90 13.97 21.65 0.30 -60.59 16 15 Si 0.94 47.10 24.93 68.60 1.71 48.81 16 16 H -0.28 -13.43 6.59 99.48 0.66 -12.78 16 17 H -0.32 -16.35 7.11 99.48 0.71 -15.65 16 18 H -0.26 -12.35 7.11 99.48 0.71 -11.65 16 19 C -0.12 -3.34 9.34 22.27 0.21 -3.13 16 20 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 22 H 0.07 1.05 8.09 -2.38 -0.02 1.03 16 23 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 24 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 25 H 0.06 2.65 6.69 -2.38 -0.02 2.64 16 26 H 0.07 2.36 7.94 -2.39 -0.02 2.35 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.03 1.44 3.23 -2.39 -0.01 1.44 16 29 H 0.06 2.09 8.02 -2.39 -0.02 2.07 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -68.15 272.57 4.86 -63.28 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.08 Total: 2.14 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 4.18 Total: -20.00 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -1.52 Total: -91.27 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.71 Total: 48.81 kcal Atomic # 35 Polarization: -2.37 SS G_CDS: -0.58 Total: -2.95 kcal Total: -68.15 4.86 -63.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137385000.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.541 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds