Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34810 * 117.00213 * 2 1 4 4 O 1.21573 * 119.99853 * 0.02562 * 3 2 1 5 5 C 1.46881 * 120.00258 * 179.97438 * 3 2 1 6 6 C 1.36187 * 123.49098 * 90.25262 * 5 3 2 7 7 C 1.50706 * 124.53932 * 359.97438 * 6 5 3 8 8 S 1.70414 * 110.92437 * 180.25164 * 6 5 3 9 9 C 1.75480 * 92.53637 * 359.72459 * 8 6 5 10 10 C 1.33282 * 110.59141 * 359.97438 * 9 8 6 11 11 N 1.40400 * 123.53530 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00304 * 6.00948 * 11 10 9 13 13 O 1.21303 * 119.99543 * 354.64175 * 12 11 10 14 14 C 1.50697 * 120.00402 * 174.64739 * 12 11 10 15 15 C 1.50697 * 109.47207 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00037 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00016 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99774 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99924 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47420 * 90.00004 * 19 17 15 21 21 H 1.48500 * 109.46949 * 209.99932 * 19 17 15 22 22 H 1.48503 * 109.47255 * 329.99692 * 19 17 15 23 23 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47105 * 299.99582 * 1 2 3 25 25 H 1.09008 * 109.46850 * 59.99792 * 1 2 3 26 26 H 1.09000 * 109.47175 * 180.33742 * 7 6 5 27 27 H 1.09003 * 109.46758 * 300.33862 * 7 6 5 28 28 H 1.09000 * 109.47027 * 60.33448 * 7 6 5 29 29 H 1.08003 * 124.71141 * 179.97438 * 9 8 6 30 30 H 0.97000 * 119.99959 * 186.00022 * 11 10 9 31 31 H 1.09006 * 109.46959 * 299.99392 * 14 12 11 32 32 H 1.08999 * 109.47366 * 59.99296 * 14 12 11 33 33 H 0.97007 * 119.99316 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4019 2.2207 0.0005 5 6 3.5308 1.2780 0.0006 6 6 4.2815 1.3221 -1.1349 7 6 3.7187 1.2979 -2.5327 8 16 5.9428 1.4007 -0.7635 9 6 5.6371 1.3828 0.9644 10 6 4.3282 1.3204 1.2082 11 7 3.7805 1.2914 2.5006 12 6 4.5792 1.4488 3.5747 13 8 5.7818 1.5181 3.4313 14 6 3.9785 1.5386 4.9539 15 6 5.0776 1.7106 5.9704 16 1 6.1081 1.7513 5.6498 17 6 4.7675 1.8171 7.3096 18 7 5.7268 1.9677 8.1967 19 14 2.9851 1.7475 7.8641 20 1 2.6083 0.3386 8.1437 21 1 2.8181 2.5585 9.0968 22 1 2.1118 2.2901 6.7925 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 4.5351 1.3378 -3.2538 27 1 3.1490 0.3802 -2.6791 28 1 3.0649 2.1582 -2.6761 29 1 6.4031 1.4174 1.7249 30 1 2.8272 1.1583 2.6205 31 1 3.3027 2.3927 5.0009 32 1 3.4246 0.6248 5.1692 33 1 5.5086 2.0423 9.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -110.157421 kcal Electronic energy + Delta-G solvation = -19619.086596 eV Core-core repulsion = 16350.010622 eV Total energy + Delta-G solvation = -3269.075974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88393 -41.07203 -38.53949 -37.45671 -35.40713 -35.09689 -32.78096 -31.31136 -29.62783 -27.70956 -26.12422 -24.43057 -23.19997 -21.40613 -20.71528 -19.43474 -19.02695 -18.58901 -17.90078 -17.34615 -16.81153 -16.62828 -16.50731 -16.04868 -15.18384 -15.08282 -15.00338 -14.46688 -14.26717 -14.09735 -13.86697 -13.69960 -13.29232 -13.10164 -13.03229 -12.83295 -12.46048 -12.32385 -11.91518 -11.87400 -11.71236 -11.58824 -11.53276 -10.81437 -10.58051 -9.72617 -8.97643 -8.29198 -6.38509 -0.22201 0.45533 0.64122 0.86353 0.96729 1.38289 1.41859 1.51742 1.72969 1.92308 2.03255 2.35419 3.04018 3.51875 3.76338 3.91277 4.14147 4.26397 4.29909 4.33602 4.57478 4.58323 4.66936 4.72581 4.76094 4.92489 4.94711 5.04116 5.13193 5.40380 5.46364 6.15582 6.39953 6.48855 6.76509 7.09888 7.26240 8.87791 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.004898 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.439152 B = 5715.699373 C = 6961.198921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.352 6.352 3 C 0.545 3.455 4 O -0.516 6.516 5 C -0.189 4.189 6 C -0.150 4.150 7 C -0.092 4.092 8 S 0.275 5.725 9 C -0.305 4.305 10 C 0.151 3.849 11 N -0.654 5.654 12 C 0.525 3.475 13 O -0.542 6.542 14 C -0.024 4.024 15 C -0.535 4.535 16 H 0.036 0.964 17 C 0.007 3.993 18 N -0.949 5.949 19 Si 0.956 3.044 20 H -0.259 1.259 21 H -0.285 1.285 22 H -0.234 1.234 23 H 0.135 0.865 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.180 0.820 30 H 0.418 0.582 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -5.028 -23.641 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.387 3.613 4 O -0.405 6.405 5 C -0.207 4.207 6 C -0.271 4.271 7 C -0.150 4.150 8 S 0.541 5.459 9 C -0.443 4.443 10 C 0.046 3.954 11 N -0.298 5.298 12 C 0.315 3.685 13 O -0.418 6.418 14 C -0.064 4.064 15 C -0.573 4.573 16 H 0.054 0.946 17 C -0.190 4.190 18 N -0.588 5.588 19 Si 0.777 3.223 20 H -0.184 1.184 21 H -0.210 1.210 22 H -0.157 1.157 23 H 0.153 0.847 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.197 0.803 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.541 -4.592 -24.326 26.531 hybrid contribution -2.062 0.105 1.993 2.870 sum -11.603 -4.487 -22.333 25.564 Atomic orbital electron populations 1.23713 0.73984 1.06187 1.03151 1.86713 1.25506 1.31408 1.83200 1.20407 0.87814 0.81786 0.71327 1.90877 1.66990 1.36956 1.45685 1.18666 0.90525 1.19377 0.92164 1.24758 1.00153 1.02422 0.99738 1.20660 1.02703 1.04334 0.87286 1.82573 0.99394 1.68223 0.95687 1.26125 0.99583 1.16530 1.02099 1.17619 0.91574 1.02205 0.83983 1.43456 1.12213 1.71221 1.02909 1.21468 0.86579 0.73487 0.86952 1.90407 1.16916 1.48800 1.85687 1.19633 0.97857 1.00889 0.88016 1.21077 0.93656 1.51073 0.91532 0.94584 1.26047 1.03230 0.93594 0.96137 1.70074 1.35373 1.50961 1.02421 0.85606 0.78507 0.79428 0.78746 1.18374 1.21039 1.15726 0.84701 0.91685 0.90989 0.87692 0.88641 0.89740 0.80328 0.74574 0.91020 0.90695 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.57 113.37 1.20 1.52 16 2 O -0.35 -7.79 10.58 -57.22 -0.61 -8.40 16 3 C 0.54 14.61 6.57 70.08 0.46 15.07 16 4 O -0.52 -15.96 16.90 19.60 0.33 -15.63 16 5 C -0.19 -5.31 5.86 -19.82 -0.12 -5.42 16 6 C -0.15 -3.32 6.34 25.21 0.16 -3.16 16 7 C -0.09 -1.26 9.81 71.24 0.70 -0.56 16 8 S 0.28 6.12 22.94 -56.49 -1.30 4.83 16 9 C -0.31 -10.31 9.99 66.70 0.67 -9.65 16 10 C 0.15 5.14 6.77 38.32 0.26 5.39 16 11 N -0.65 -23.32 5.43 -302.35 -1.64 -24.96 16 12 C 0.52 23.35 7.78 87.66 0.68 24.03 16 13 O -0.54 -28.06 12.32 -3.10 -0.04 -28.10 16 14 C -0.02 -1.11 4.53 29.10 0.13 -0.98 16 15 C -0.54 -31.75 9.48 25.60 0.24 -31.51 16 16 H 0.04 2.49 7.00 -2.91 -0.02 2.47 16 17 C 0.01 0.41 5.47 84.65 0.46 0.88 16 18 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 19 Si 0.96 41.80 27.47 68.60 1.88 43.69 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 23 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.10 0.89 8.11 -2.39 -0.02 0.88 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.18 7.25 5.34 -2.93 -0.02 7.24 16 30 H 0.42 12.42 8.29 -92.71 -0.77 11.65 16 31 H 0.07 3.02 7.20 -2.38 -0.02 3.01 16 32 H 0.08 3.03 7.57 -2.39 -0.02 3.01 16 33 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -78.62 306.04 4.12 -74.51 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.34 Total: 18.31 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.85 Total: -4.38 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.34 Total: -84.82 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.31 Total: -52.12 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.69 kcal Atomic # 16 Polarization: 6.12 SS G_CDS: -1.30 Total: 4.83 kcal Total: -78.62 4.12 -74.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.652 kcal (2) G-P(sol) polarization free energy of solvation -78.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds