Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 119.99506 * 2 1 4 4 C 1.38302 * 119.98882 * 180.02562 * 3 2 1 5 5 Br 1.89104 * 120.00715 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.98188 * 359.97438 * 4 3 2 7 7 C 1.38199 * 119.98991 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.99368 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47366 * 270.02373 * 8 7 6 10 10 C 1.46498 * 120.00070 * 90.00166 * 9 8 7 11 11 C 1.36939 * 119.99801 * 270.00114 * 9 8 7 12 12 H 1.07996 * 119.99874 * 23.04107 * 11 9 8 13 13 C 1.38809 * 119.99980 * 203.04387 * 11 9 8 14 14 N 1.31621 * 120.00306 * 13.05100 * 13 11 9 15 15 Si 1.86797 * 120.00064 * 193.05506 * 13 11 9 16 16 H 1.48499 * 109.47687 * 89.99837 * 15 13 11 17 17 H 1.48504 * 109.47418 * 209.99917 * 15 13 11 18 18 H 1.48508 * 109.47102 * 329.99437 * 15 13 11 19 19 C 1.38221 * 119.99399 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47496 * 270.00672 * 1 2 3 21 21 H 1.08997 * 109.46873 * 30.01075 * 1 2 3 22 22 H 1.09007 * 109.46441 * 150.00269 * 1 2 3 23 23 H 1.07999 * 120.00666 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.00709 * 180.02562 * 6 4 3 25 25 H 1.09005 * 109.47082 * 30.02273 * 8 7 6 26 26 H 1.09002 * 109.47207 * 150.02081 * 8 7 6 27 27 H 1.09007 * 109.47057 * 95.12708 * 10 9 8 28 28 H 1.09000 * 109.47219 * 215.12616 * 10 9 8 29 29 H 1.09001 * 109.46803 * 335.12597 * 10 9 8 30 30 H 0.96992 * 120.00398 * 180.02562 * 14 13 11 31 31 H 1.07995 * 119.99141 * 0.27763 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5811 1.1971 -0.0005 5 35 4.5270 2.8346 -0.0013 6 6 4.2723 -0.0013 -0.0005 7 6 3.5806 -1.1977 0.0005 8 6 4.3334 -2.5031 0.0000 9 7 4.5763 -2.9262 -1.3814 10 6 5.7968 -2.5040 -2.0730 11 6 3.6625 -3.7164 -2.0262 12 1 2.6333 -3.7287 -1.6992 13 6 4.0590 -4.5016 -3.1000 14 7 5.3393 -4.6901 -3.3402 15 14 2.7756 -5.2907 -4.2043 16 1 2.4476 -4.3676 -5.3203 17 1 3.3102 -6.5622 -4.7545 18 1 1.5484 -5.5699 -3.4159 19 6 2.1980 -1.1971 0.0005 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3632 -0.8901 -0.5138 23 1 1.6581 2.1326 0.0004 24 1 5.3524 -0.0019 -0.0005 25 1 5.2864 -2.3732 0.5130 26 1 3.7444 -3.2625 0.5143 27 1 6.5553 -3.2812 -1.9786 28 1 5.5775 -2.3365 -3.1275 29 1 6.1658 -1.5802 -1.6274 30 1 5.6164 -5.2384 -4.0907 31 1 1.6578 -2.1322 -0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144218004.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 39.584017 kcal Electronic energy + Delta-G solvation = -14617.260888 eV Core-core repulsion = 12138.206798 eV Total energy + Delta-G solvation = -2479.054090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.19129 -35.62598 -32.95070 -32.38197 -30.56845 -29.15429 -26.82315 -26.16426 -25.60070 -21.97550 -21.12307 -19.95511 -16.74751 -16.13632 -15.28612 -14.96030 -14.47344 -13.80748 -13.46169 -13.18984 -13.05849 -12.87605 -12.22999 -12.18409 -11.82938 -11.39553 -10.94923 -10.89643 -10.79523 -10.58720 -10.45933 -10.25445 -10.12155 -9.96081 -9.91657 -8.60330 -8.31582 -8.28412 -6.78875 -5.74181 -3.21994 1.48352 1.64921 1.84209 3.37026 3.43241 3.44322 3.94625 4.50664 4.97932 5.11561 5.32604 5.41506 5.58863 5.60373 5.67320 5.70593 5.80501 5.91396 6.00480 6.29666 6.38105 6.47304 6.60306 6.73331 6.79020 7.08146 7.22033 7.36864 7.70885 7.78892 8.36611 9.20483 9.82996 10.31740 11.30373 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.005365 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.179444 B = 5218.208543 C = 5920.749295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.110 4.110 4 C -0.086 4.086 5 Br -0.072 7.072 6 C -0.090 4.090 7 C -0.069 4.069 8 C 0.181 3.819 9 N -0.592 5.592 10 C 0.162 3.838 11 C -0.256 4.256 12 H 0.068 0.932 13 C 0.004 3.996 14 N -0.906 5.906 15 Si 0.904 3.096 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.279 1.279 19 C -0.088 4.088 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.034 0.966 28 H 0.040 0.960 29 H -0.002 1.002 30 H 0.253 0.747 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 13.611 8.437 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.165 4.165 5 Br 0.013 6.987 6 C -0.111 4.111 7 C -0.073 4.073 8 C 0.054 3.946 9 N -0.314 5.314 10 C 0.017 3.983 11 C -0.386 4.386 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.551 5.551 15 Si 0.734 3.266 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.107 4.107 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.143 0.857 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.068 14.082 8.275 16.832 hybrid contribution -0.809 -0.689 -0.865 1.370 sum -4.877 13.393 7.410 16.064 Atomic orbital electron populations 1.20750 0.91107 1.02797 1.02023 1.19855 0.95949 0.92740 1.00297 1.20750 0.91854 0.98021 1.02350 1.21654 0.94503 0.90918 1.09401 1.96612 1.75880 1.28264 1.97924 1.20976 0.99910 0.90420 0.99762 1.21299 0.94298 0.97273 0.94441 1.19800 0.96667 0.90076 0.88084 1.43875 1.22347 1.56755 1.08384 1.20829 0.88142 0.93703 0.95611 1.19158 0.89830 1.17682 1.11880 0.91434 1.25007 0.95879 0.98050 1.00532 1.70067 1.13342 1.41322 1.30341 0.86264 0.80831 0.78523 0.80965 1.21499 1.21688 1.20436 1.21096 0.94005 0.97373 0.98261 0.91382 0.91810 0.91280 0.85979 0.85715 0.93308 0.92120 0.94804 0.94114 0.98334 0.93693 0.85694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.09 -1.30 5.88 -104.63 -0.62 -1.91 16 3 C -0.11 -1.61 9.44 -39.56 -0.37 -1.99 16 4 C -0.09 -1.35 6.22 -39.52 -0.25 -1.59 16 5 Br -0.07 -0.98 33.70 -68.01 -2.29 -3.28 16 6 C -0.09 -1.55 9.44 -39.56 -0.37 -1.92 16 7 C -0.07 -1.26 5.46 -104.63 -0.57 -1.83 16 8 C 0.18 3.67 5.77 -5.20 -0.03 3.64 16 9 N -0.59 -14.74 2.91 -182.50 -0.53 -15.27 16 10 C 0.16 4.00 8.98 59.85 0.54 4.54 16 11 C -0.26 -6.93 9.65 -15.06 -0.15 -7.08 16 12 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 13 C 0.00 0.10 5.10 -17.43 -0.09 0.02 16 14 N -0.91 -26.39 10.72 55.49 0.59 -25.80 16 15 Si 0.90 21.80 29.57 -169.99 -5.03 16.77 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C -0.09 -1.50 9.36 -39.58 -0.37 -1.87 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 22 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 23 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 24 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 25 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 26 H 0.06 1.20 7.98 -51.93 -0.41 0.78 16 27 H 0.03 0.90 7.34 -51.92 -0.38 0.52 16 28 H 0.04 1.09 7.35 -51.93 -0.38 0.71 16 29 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 286.91 15.07 4.32 4.32 Total: -1.00 -29.09 286.91 -8.94 -38.03 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -4.09 Total: -3.89 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.92 Total: -10.90 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.06 Total: -41.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -2.29 Total: -3.28 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.09 -8.94 -38.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144218004.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.613 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds