Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38238 * 119.99506 * 2 1 4 4 C 1.38302 * 119.98882 * 180.02562 * 3 2 1 5 5 Br 1.89104 * 120.00715 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.98188 * 359.97438 * 4 3 2 7 7 C 1.38199 * 119.98991 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.99368 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47366 * 270.02373 * 8 7 6 10 10 C 1.46498 * 120.00070 * 90.00166 * 9 8 7 11 11 C 1.36939 * 119.99801 * 270.00114 * 9 8 7 12 12 H 1.07996 * 119.99874 * 23.04107 * 11 9 8 13 13 C 1.38809 * 119.99980 * 203.04387 * 11 9 8 14 14 N 1.31621 * 120.00306 * 13.05100 * 13 11 9 15 15 Si 1.86797 * 120.00064 * 193.05506 * 13 11 9 16 16 H 1.48499 * 109.47687 * 89.99837 * 15 13 11 17 17 H 1.48504 * 109.47418 * 209.99917 * 15 13 11 18 18 H 1.48508 * 109.47102 * 329.99437 * 15 13 11 19 19 C 1.38221 * 119.99399 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47496 * 270.00672 * 1 2 3 21 21 H 1.08997 * 109.46873 * 30.01075 * 1 2 3 22 22 H 1.09007 * 109.46441 * 150.00269 * 1 2 3 23 23 H 1.07999 * 120.00666 * 0.02562 * 3 2 1 24 24 H 1.08003 * 120.00709 * 180.02562 * 6 4 3 25 25 H 1.09005 * 109.47082 * 30.02273 * 8 7 6 26 26 H 1.09002 * 109.47207 * 150.02081 * 8 7 6 27 27 H 1.09007 * 109.47057 * 95.12708 * 10 9 8 28 28 H 1.09000 * 109.47219 * 215.12616 * 10 9 8 29 29 H 1.09001 * 109.46803 * 335.12597 * 10 9 8 30 30 H 0.96992 * 120.00398 * 180.02562 * 14 13 11 31 31 H 1.07995 * 119.99141 * 0.27763 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5811 1.1971 -0.0005 5 35 4.5270 2.8346 -0.0013 6 6 4.2723 -0.0013 -0.0005 7 6 3.5806 -1.1977 0.0005 8 6 4.3334 -2.5031 0.0000 9 7 4.5763 -2.9262 -1.3814 10 6 5.7968 -2.5040 -2.0730 11 6 3.6625 -3.7164 -2.0262 12 1 2.6333 -3.7287 -1.6992 13 6 4.0590 -4.5016 -3.1000 14 7 5.3393 -4.6901 -3.3402 15 14 2.7756 -5.2907 -4.2043 16 1 2.4476 -4.3676 -5.3203 17 1 3.3102 -6.5622 -4.7545 18 1 1.5484 -5.5699 -3.4159 19 6 2.1980 -1.1971 0.0005 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3632 -0.8901 -0.5138 23 1 1.6581 2.1326 0.0004 24 1 5.3524 -0.0019 -0.0005 25 1 5.2864 -2.3732 0.5130 26 1 3.7444 -3.2625 0.5143 27 1 6.5553 -3.2812 -1.9786 28 1 5.5775 -2.3365 -3.1275 29 1 6.1658 -1.5802 -1.6274 30 1 5.6164 -5.2384 -4.0907 31 1 1.6578 -2.1322 -0.0036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144218004.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 25.184359 kcal Electronic energy + Delta-G solvation = -14617.885304 eV Core-core repulsion = 12138.206798 eV Total energy + Delta-G solvation = -2479.678506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46439 -37.43748 -34.27204 -33.86261 -32.28797 -30.41060 -28.11865 -27.85860 -27.37160 -23.70275 -22.41969 -21.41658 -18.71251 -17.41225 -16.93171 -16.58239 -15.80497 -15.49090 -15.09362 -14.62115 -14.57634 -14.07456 -13.61287 -13.32603 -13.20673 -13.06374 -12.83493 -12.56514 -12.47775 -12.07346 -11.98133 -11.97008 -11.79905 -11.53095 -11.24378 -10.65439 -9.61419 -9.50562 -8.79995 -7.82381 -5.32387 0.22568 0.39356 0.65223 1.45865 1.47661 1.55760 2.48403 2.70730 3.31112 3.82919 3.86415 3.91918 4.15684 4.36479 4.43581 4.45665 4.63161 4.81039 4.86393 4.91975 4.97184 5.03447 5.22017 5.28285 5.33317 5.53148 5.64209 5.68805 5.74040 5.97394 6.31795 7.13894 7.84193 8.29111 9.20791 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.005365 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.179444 B = 5218.208543 C = 5920.749295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.084 4.084 3 C -0.106 4.106 4 C -0.093 4.093 5 Br -0.052 7.052 6 C -0.102 4.102 7 C -0.085 4.085 8 C 0.182 3.818 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.257 4.257 12 H 0.073 0.927 13 C -0.054 4.054 14 N -0.940 5.940 15 Si 0.966 3.034 16 H -0.290 1.290 17 H -0.295 1.295 18 H -0.264 1.264 19 C -0.103 4.103 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.068 0.932 23 H 0.148 0.852 24 H 0.124 0.876 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.027 0.973 30 H 0.248 0.752 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 15.103 9.049 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.173 4.173 5 Br 0.034 6.966 6 C -0.123 4.123 7 C -0.089 4.089 8 C 0.056 3.944 9 N -0.331 5.331 10 C 0.033 3.967 11 C -0.387 4.387 12 H 0.091 0.909 13 C -0.249 4.249 14 N -0.587 5.587 15 Si 0.794 3.206 16 H -0.217 1.217 17 H -0.222 1.222 18 H -0.189 1.189 19 C -0.122 4.122 20 H 0.106 0.894 21 H 0.099 0.901 22 H 0.087 0.913 23 H 0.166 0.834 24 H 0.142 0.858 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.027 0.973 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.907 15.600 8.929 18.920 hybrid contribution -0.255 -1.030 -0.949 1.423 sum -6.162 14.571 7.980 17.719 Atomic orbital electron populations 1.20825 0.88479 1.03654 1.03553 1.20215 0.97843 0.91895 0.98566 1.21114 0.91581 0.99084 1.00818 1.21827 0.95253 0.91363 1.08820 1.96627 1.75663 1.26508 1.97847 1.20987 0.99995 0.90786 1.00502 1.20970 0.94865 0.96392 0.96695 1.19875 0.97565 0.91168 0.85769 1.44083 1.21953 1.56986 1.10124 1.20529 0.87811 0.94084 0.94266 1.19498 0.90488 1.17008 1.11726 0.90903 1.25779 0.97606 0.99284 1.02200 1.70228 1.15067 1.42560 1.30825 0.85281 0.79058 0.77172 0.79064 1.21703 1.22155 1.18861 1.21207 0.93632 0.98400 0.98971 0.89409 0.90060 0.91343 0.83390 0.85815 0.92265 0.92137 0.97278 0.97025 0.95461 0.94315 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 10.01 71.24 0.71 -1.41 16 2 C -0.08 -2.29 5.88 -19.87 -0.12 -2.40 16 3 C -0.11 -2.81 9.44 22.29 0.21 -2.60 16 4 C -0.09 -2.74 6.22 22.31 0.14 -2.60 16 5 Br -0.05 -1.30 33.70 -20.37 -0.69 -1.99 16 6 C -0.10 -3.39 9.44 22.29 0.21 -3.18 16 7 C -0.09 -3.06 5.46 -19.87 -0.11 -3.17 16 8 C 0.18 7.34 5.77 85.63 0.49 7.84 16 9 N -0.61 -30.54 2.91 -731.31 -2.12 -32.67 16 10 C 0.18 8.98 8.98 127.77 1.15 10.13 16 11 C -0.26 -13.97 9.65 84.03 0.81 -13.16 16 12 H 0.07 3.80 7.86 -2.91 -0.02 3.77 16 13 C -0.05 -3.02 5.10 84.86 0.43 -2.59 16 14 N -0.94 -56.09 10.72 21.65 0.23 -55.85 16 15 Si 0.97 45.07 29.57 68.60 2.03 47.10 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 17 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 18 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 19 C -0.10 -3.36 9.36 22.27 0.21 -3.15 16 20 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.08 1.32 8.09 -2.39 -0.02 1.31 16 22 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 23 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 24 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 25 H 0.06 2.21 8.02 -2.38 -0.02 2.19 16 26 H 0.06 2.39 7.98 -2.39 -0.02 2.37 16 27 H 0.01 0.49 7.34 -2.38 -0.02 0.47 16 28 H 0.01 0.61 7.35 -2.39 -0.02 0.60 16 29 H 0.03 1.18 8.03 -2.39 -0.02 1.16 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -61.95 286.91 4.70 -57.25 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.11 Total: 2.46 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.14 Total: -16.30 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -1.89 Total: -88.52 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 35 Polarization: -1.30 SS G_CDS: -0.69 Total: -1.99 kcal Total: -61.95 4.70 -57.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144218004.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.434 kcal (2) G-P(sol) polarization free energy of solvation -61.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds