Wall clock time and date at job start Tue Mar 31 2020 05:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99999 * 2 1 4 4 H 1.48507 * 109.47206 * 240.00304 * 3 2 1 5 5 H 1.48506 * 109.47262 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47122 * 120.00217 * 3 2 1 7 7 C 1.38811 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99435 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99710 * 180.02562 * 9 7 2 11 11 F 1.39905 * 109.46950 * 60.00594 * 10 9 7 12 12 F 1.39894 * 109.47711 * 300.00250 * 10 9 7 13 13 C 1.50702 * 109.46798 * 180.02562 * 10 9 7 14 14 N 1.32333 * 120.44904 * 4.99837 * 13 10 9 15 15 C 1.31904 * 120.81956 * 179.97438 * 14 13 10 16 16 Cl 1.73606 * 119.12370 * 180.02562 * 15 14 13 17 17 N 1.31928 * 121.75168 * 0.02562 * 15 14 13 18 18 C 1.32312 * 120.81561 * 359.97438 * 17 15 14 19 19 C 1.38686 * 120.44659 * 184.97965 * 13 10 9 20 20 Cl 1.73598 * 120.79890 * 0.02562 * 19 13 10 21 21 H 0.97002 * 120.00323 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00311 * 0.02562 * 9 7 2 23 23 H 1.07994 * 120.44603 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 9 2.8623 -3.7309 1.1419 12 9 2.8624 -3.7309 -1.1427 13 6 1.0787 -4.8022 -0.0012 14 7 -0.2209 -4.5734 -0.1010 15 6 -1.0844 -5.5704 -0.1028 16 17 -2.7795 -5.2199 -0.2367 17 7 -0.6943 -6.8270 -0.0056 18 6 0.5890 -7.1322 0.0974 19 6 1.5273 -6.1104 0.1025 20 17 3.2223 -6.4609 0.2358 21 1 -0.4851 0.8400 -0.0004 22 1 0.3555 -2.3881 -0.0005 23 1 0.9016 -8.1628 0.1771 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155530678.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:49 Heat of formation + Delta-G solvation = -29.568547 kcal Electronic energy + Delta-G solvation = -17870.966217 eV Core-core repulsion = 14250.447329 eV Total energy + Delta-G solvation = -3620.518888 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.979 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.08535 -46.17589 -41.24916 -37.12067 -36.75979 -35.11159 -33.81020 -31.98362 -30.81677 -26.82876 -24.77396 -23.85121 -21.91890 -18.72796 -18.34814 -17.07322 -16.86856 -16.52496 -16.23751 -15.46584 -15.42866 -14.31950 -14.30251 -13.22844 -13.17643 -12.67089 -12.55463 -12.44246 -11.96717 -11.70204 -11.58835 -11.53417 -11.36659 -11.21004 -11.04132 -11.04010 -10.34237 -10.11035 -9.63051 -9.43134 -9.32688 -7.74286 -6.12916 -3.46357 0.23340 0.58053 1.20556 1.80507 3.20720 3.25119 3.33010 3.35436 3.37768 3.79656 4.09356 4.32820 4.42114 4.77674 5.11318 5.21459 5.45260 5.60000 6.00796 6.41341 7.40879 7.51874 7.96476 9.14403 9.42555 9.88668 11.05446 Molecular weight = 282.98amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.007330 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.014559 B = 3818.931258 C = 5290.478376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.008 3.992 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.084 0.916 9 N -0.695 5.695 10 C 0.560 3.440 11 F -0.198 7.198 12 F -0.200 7.200 13 C 0.158 3.842 14 N -0.454 5.454 15 C 0.365 3.635 16 Cl 0.041 6.959 17 N -0.494 5.494 18 C 0.182 3.818 19 C -0.131 4.131 20 Cl -0.012 7.012 21 H 0.266 0.734 22 H 0.417 0.583 23 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 -14.035 0.180 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.752 3.248 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.102 0.898 9 N -0.344 5.344 10 C 0.430 3.570 11 F -0.180 7.180 12 F -0.182 7.182 13 C 0.008 3.992 14 N -0.171 5.171 15 C 0.072 3.928 16 Cl 0.069 6.931 17 N -0.212 5.212 18 C 0.015 3.985 19 C -0.164 4.164 20 Cl 0.017 6.983 21 H 0.076 0.924 22 H 0.258 0.742 23 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.811 -13.588 0.101 13.612 hybrid contribution 1.025 0.641 0.063 1.210 sum 0.214 -12.947 0.164 12.950 Atomic orbital electron populations 1.69705 1.05434 1.27241 1.52348 1.24959 0.95699 0.98468 1.00049 0.86031 0.78643 0.81622 0.78516 1.20395 1.21106 1.20399 1.19317 0.91927 0.82928 1.45483 0.89767 1.43535 1.08092 0.98754 1.83975 1.17119 0.78451 0.86305 0.75171 1.93123 1.76316 1.96494 1.52103 1.93120 1.76344 1.96495 1.52211 1.21844 0.91077 0.92601 0.93690 1.67595 1.01095 1.35887 1.12502 1.23057 0.90377 0.85001 0.94407 1.98456 1.04921 1.94415 1.95266 1.68031 1.17649 1.20382 1.15151 1.23224 0.85552 0.99823 0.89898 1.22578 0.90058 0.95954 1.07815 1.98419 1.09356 1.94727 1.95836 0.92387 0.74176 0.79148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.06 55.49 0.72 -25.40 14 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 14 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 14 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 7 C -0.27 -7.42 9.68 -15.06 -0.15 -7.57 14 8 H 0.08 2.29 7.83 -52.49 -0.41 1.87 14 9 N -0.69 -18.19 5.46 -59.64 -0.33 -18.52 14 10 C 0.56 12.54 1.93 -5.19 -0.01 12.53 14 11 F -0.20 -4.38 15.89 2.25 0.04 -4.35 14 12 F -0.20 -4.45 16.62 2.25 0.04 -4.42 14 13 C 0.16 3.04 6.27 -82.21 -0.52 2.53 14 14 N -0.45 -8.88 8.83 -7.86 -0.07 -8.94 14 15 C 0.36 6.08 8.18 -91.95 -0.75 5.32 14 16 Cl 0.04 0.61 29.27 -51.86 -1.52 -0.91 14 17 N -0.49 -7.15 10.40 -11.61 -0.12 -7.28 14 18 C 0.18 2.27 11.13 -17.16 -0.19 2.08 14 19 C -0.13 -1.99 6.30 -39.23 -0.25 -2.24 14 20 Cl -0.01 -0.17 26.91 -51.86 -1.40 -1.56 14 21 H 0.27 7.33 8.31 -40.82 -0.34 6.99 14 22 H 0.42 11.30 6.51 -40.82 -0.27 11.04 14 23 H 0.19 1.48 8.06 -52.49 -0.42 1.06 14 LS Contribution 257.00 15.07 3.87 3.87 Total: -1.00 -29.43 257.00 -5.97 -35.41 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -0.23 Total: 2.84 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -1.96 Total: 12.78 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.21 Total: -60.14 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -2.91 Total: -2.47 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.43 -5.97 -35.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530678.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.839 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds