Wall clock time and date at job start Tue Mar 31 2020 05:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31466 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48500 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46647 * 299.99847 * 3 2 1 6 6 H 1.48497 * 109.47019 * 59.99840 * 3 2 1 7 7 C 1.38922 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 180.02562 * 7 2 1 9 9 N 1.36842 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.37836 * 120.00091 * 179.97438 * 9 7 2 11 11 N 1.32711 * 120.90629 * 359.97438 * 10 9 7 12 12 C 1.32390 * 121.47315 * 180.02562 * 11 10 9 13 13 Cl 1.73608 * 118.52507 * 180.02562 * 12 11 10 14 14 N 1.31375 * 122.95149 * 0.02562 * 12 11 10 15 15 C 1.34104 * 120.46288 * 359.97438 * 14 12 11 16 16 C 1.40168 * 121.96641 * 180.02562 * 15 14 12 17 17 C 1.36318 * 119.59828 * 179.97438 * 16 15 14 18 18 C 1.39311 * 121.01297 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 119.56061 * 179.97438 * 18 17 16 20 20 C 1.36520 * 120.87672 * 359.97438 * 18 17 16 21 21 C 1.39888 * 119.49849 * 0.02562 * 20 18 17 22 22 H 0.96996 * 120.00340 * 359.97438 * 1 2 3 23 23 H 0.97006 * 119.99784 * 359.97438 * 9 7 2 24 24 H 1.08003 * 120.20053 * 0.02562 * 16 15 14 25 25 H 1.07997 * 119.49221 * 179.97438 * 17 16 15 26 26 H 1.07993 * 120.25261 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.7087 1.3464 -0.0006 5 1 1.8899 2.3964 -1.2126 6 1 1.8899 2.3964 1.2125 7 6 2.0094 -1.2031 0.0005 8 1 3.0893 -1.2030 0.0010 9 7 1.3252 -2.3882 0.0005 10 6 2.0144 -3.5818 0.0005 11 7 3.3413 -3.6028 0.0000 12 6 4.0146 -4.7427 -0.0005 13 17 5.7496 -4.6808 -0.0004 14 7 3.4289 -5.9186 -0.0010 15 6 2.0910 -6.0118 -0.0005 16 6 1.4333 -7.2496 -0.0006 17 6 0.0707 -7.2880 0.0005 18 6 -0.6804 -6.1147 0.0010 19 17 -2.4139 -6.2076 0.0016 20 6 -0.0714 -4.8929 0.0010 21 6 1.3256 -4.8196 0.0000 22 1 -0.4850 0.8400 0.0004 23 1 0.3551 -2.3882 0.0005 24 1 2.0027 -8.1673 -0.0005 25 1 -0.4343 -8.2426 0.0000 26 1 -0.6635 -3.9898 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155530902.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:31 Heat of formation + Delta-G solvation = 44.384960 kcal Electronic energy + Delta-G solvation = -16811.848318 eV Core-core repulsion = 13748.765825 eV Total energy + Delta-G solvation = -3063.082493 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.40980 -37.38743 -36.61534 -36.07825 -35.40892 -33.28278 -31.28342 -30.67839 -28.95094 -25.73900 -23.66547 -23.22491 -21.24566 -19.06340 -18.45070 -16.94901 -16.84652 -15.31514 -14.91065 -14.70542 -14.59229 -14.28438 -13.87854 -13.35945 -12.84359 -12.41425 -12.32452 -12.17020 -11.56140 -11.45900 -11.28854 -11.08735 -10.76347 -10.69942 -10.59826 -10.22301 -9.95463 -9.80269 -8.78496 -8.64969 -8.19103 -7.32932 -7.31531 -4.36203 0.98409 1.38474 2.25090 2.46690 2.54575 2.88452 2.89644 2.96430 3.46259 3.57486 4.25126 4.37041 4.90009 5.02427 5.06657 5.33577 5.45337 5.72486 6.02965 6.11223 6.23999 6.42783 6.62711 6.74389 6.81357 7.00991 7.33733 7.80952 8.08854 8.49591 8.63889 9.22647 9.79438 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.007208 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.066912 B = 3883.612280 C = 6227.837318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.027 3.973 3 Si 0.950 3.050 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.267 4.267 8 H 0.133 0.867 9 N -0.452 5.452 10 C 0.348 3.652 11 N -0.597 5.597 12 C 0.436 3.564 13 Cl -0.020 7.020 14 N -0.617 5.617 15 C 0.227 3.773 16 C -0.130 4.130 17 C -0.070 4.070 18 C -0.088 4.088 19 Cl -0.092 7.092 20 C -0.056 4.056 21 C -0.184 4.184 22 H 0.292 0.708 23 H 0.414 0.586 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -5.416 0.004 5.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.400 4.400 8 H 0.151 0.849 9 N -0.050 5.050 10 C 0.094 3.906 11 N -0.333 5.333 12 C 0.137 3.863 13 Cl 0.008 6.992 14 N -0.350 5.350 15 C 0.101 3.899 16 C -0.152 4.152 17 C -0.091 4.091 18 C -0.117 4.117 19 Cl -0.063 7.063 20 C -0.078 4.078 21 C -0.194 4.194 22 H 0.102 0.898 23 H 0.252 0.748 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.170 -4.886 0.003 4.889 hybrid contribution -1.084 0.847 0.000 1.376 sum -1.254 -4.039 0.003 4.229 Atomic orbital electron populations 1.69619 1.06733 1.30939 1.40573 1.25864 0.95968 1.01637 0.94933 0.85443 0.80164 0.78364 0.78671 1.17877 1.19649 1.19644 1.20628 0.95149 0.81253 1.43004 0.84930 1.41161 1.09169 1.02909 1.51805 1.17660 0.87491 0.84629 1.00806 1.66939 1.06509 1.28951 1.30912 1.22031 0.87387 0.85281 0.91579 1.98342 1.06048 1.98439 1.96373 1.68139 1.08696 1.25601 1.32553 1.18432 0.88395 0.91909 0.91200 1.20313 0.92824 0.96295 1.05777 1.20551 0.93403 0.96728 0.98391 1.20127 0.83406 0.94731 1.13419 1.98318 1.11757 1.98745 1.97513 1.20449 0.92967 0.96603 0.97738 1.18651 0.93801 0.94639 1.12297 0.89771 0.74772 0.84626 0.85376 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.08 13.05 55.50 0.72 -18.36 15 2 C 0.03 0.59 5.50 -17.45 -0.10 0.50 15 3 Si 0.95 17.28 29.55 -169.99 -5.02 12.25 15 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 7 C -0.27 -6.18 9.72 -15.06 -0.15 -6.33 15 8 H 0.13 3.16 7.12 -52.49 -0.37 2.78 15 9 N -0.45 -10.15 5.34 -10.73 -0.06 -10.21 15 10 C 0.35 7.85 7.50 -154.91 -1.16 6.69 15 11 N -0.60 -13.87 9.17 -10.59 -0.10 -13.97 15 12 C 0.44 9.52 8.15 -92.00 -0.75 8.77 15 13 Cl -0.02 -0.36 29.24 -51.86 -1.52 -1.88 15 14 N -0.62 -13.22 10.40 -9.71 -0.10 -13.32 15 15 C 0.23 4.60 6.61 -84.84 -0.56 4.04 15 16 C -0.13 -2.18 10.01 -39.55 -0.40 -2.58 15 17 C -0.07 -1.06 9.72 -39.87 -0.39 -1.44 15 18 C -0.09 -1.44 6.28 -39.80 -0.25 -1.69 15 19 Cl -0.09 -1.34 28.92 -51.86 -1.50 -2.84 15 20 C -0.06 -1.02 9.28 -39.58 -0.37 -1.38 15 21 C -0.18 -3.80 5.76 -106.67 -0.61 -4.42 15 22 H 0.29 6.07 8.31 -40.82 -0.34 5.73 15 23 H 0.41 8.94 6.15 -40.82 -0.25 8.69 15 24 H 0.14 1.99 8.06 -52.48 -0.42 1.56 15 25 H 0.13 1.55 8.06 -52.49 -0.42 1.13 15 26 H 0.13 2.21 6.58 -52.49 -0.35 1.87 15 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -24.37 269.79 -9.19 -33.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -0.95 Total: 8.54 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -4.73 Total: 2.15 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.47 Total: -55.86 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.02 Total: 12.25 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -3.02 Total: -4.71 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -24.37 -9.19 -33.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530902.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.943 kcal (2) G-P(sol) polarization free energy of solvation -24.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds