Wall clock time and date at job start Tue Mar 31 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48507 * 109.46684 * 240.00020 * 3 2 1 5 5 H 1.48498 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46920 * 120.00247 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 F 1.39905 * 109.47080 * 299.99868 * 10 9 7 12 12 F 1.39900 * 109.47431 * 59.99688 * 10 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 14 14 C 1.38518 * 120.78979 * 239.72102 * 13 10 9 15 15 N 1.32356 * 119.13704 * 179.69922 * 14 13 10 16 16 C 1.31928 * 120.84020 * 0.60607 * 15 14 13 17 17 Cl 1.73599 * 119.13870 * 179.68499 * 16 15 14 18 18 N 1.31913 * 121.73300 * 359.66659 * 16 15 14 19 19 C 1.32458 * 120.77472 * 0.02562 * 18 16 15 20 20 Cl 1.73605 * 120.45221 * 179.97438 * 19 18 16 21 21 H 0.96998 * 120.00532 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 23 23 H 1.08005 * 120.42984 * 359.97438 * 14 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 9 2.8634 -3.7303 -1.1433 12 9 2.8617 -3.7313 1.1412 13 6 1.0789 -4.8022 -0.0022 14 6 1.0738 -5.7313 1.0252 15 7 0.1955 -6.7209 0.9947 16 6 -0.6596 -6.8358 -0.0033 17 17 -1.7871 -8.1558 -0.0027 18 7 -0.6808 -5.9737 -1.0015 19 6 0.1647 -4.9547 -1.0350 20 17 0.1300 -3.8255 -2.3532 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 -0.0016 23 1 1.7745 -5.6466 1.8427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530965.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:46 Heat of formation + Delta-G solvation = -53.437560 kcal Electronic energy + Delta-G solvation = -17872.314923 eV Core-core repulsion = 14250.760998 eV Total energy + Delta-G solvation = -3621.553926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.979 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.78706 -47.89148 -42.55875 -38.43983 -38.09397 -36.50008 -35.30335 -34.25173 -32.32166 -27.82506 -26.25984 -25.63523 -23.46661 -20.08882 -19.82006 -19.49515 -18.55711 -17.88496 -17.85564 -16.90932 -16.18722 -16.16139 -15.44366 -15.21094 -14.66325 -14.37432 -14.26640 -14.09881 -13.96078 -13.24637 -13.04245 -12.90574 -12.83837 -12.62771 -12.32153 -12.18352 -11.91907 -11.87032 -11.49446 -11.01927 -10.91038 -9.69158 -8.09831 -5.54344 -1.07385 -0.68269 -0.21602 0.37866 1.49794 1.52147 1.58204 1.89870 2.09361 2.47665 2.56602 2.82213 3.05845 3.21020 3.29703 3.57884 3.82573 4.40100 4.49599 5.01081 5.38305 5.98002 6.12872 7.12919 7.50418 7.87213 9.09935 Molecular weight = 282.98amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.005645 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.844731 B = 4959.234716 C = 5229.902249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.041 4.041 3 Si 0.979 3.021 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.276 4.276 8 H 0.080 0.920 9 N -0.721 5.721 10 C 0.566 3.434 11 F -0.204 7.204 12 F -0.200 7.200 13 C -0.244 4.244 14 C 0.232 3.768 15 N -0.498 5.498 16 C 0.384 3.616 17 Cl 0.067 6.933 18 N -0.513 5.513 19 C 0.264 3.736 20 Cl 0.031 6.969 21 H 0.260 0.740 22 H 0.396 0.604 23 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 -13.644 0.244 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.236 4.236 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.406 4.406 8 H 0.098 0.902 9 N -0.370 5.370 10 C 0.437 3.563 11 F -0.186 7.186 12 F -0.182 7.182 13 C -0.251 4.251 14 C 0.066 3.934 15 N -0.215 5.215 16 C 0.091 3.909 17 Cl 0.096 6.904 18 N -0.232 5.232 19 C 0.092 3.908 20 Cl 0.060 6.940 21 H 0.069 0.931 22 H 0.232 0.768 23 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.952 -14.279 0.112 14.311 hybrid contribution 0.434 1.604 -0.330 1.694 sum -0.519 -12.675 -0.217 12.687 Atomic orbital electron populations 1.69781 1.06527 1.27234 1.56106 1.25589 0.96371 1.01060 1.00564 0.85173 0.77404 0.78362 0.78494 1.20169 1.21571 1.19920 1.19346 0.91712 0.83867 1.45666 0.90222 1.43398 1.06603 0.99689 1.87301 1.17252 0.79084 0.86184 0.73766 1.93074 1.76464 1.96583 1.52490 1.93021 1.76543 1.96514 1.52077 1.21797 1.02099 1.01537 0.99709 1.23789 0.91540 0.83439 0.94630 1.68235 1.05260 1.23387 1.24629 1.23446 0.91052 0.90359 0.86059 1.98463 1.55179 1.39273 1.97526 1.67452 1.24473 1.03706 1.27617 1.21887 0.89165 0.89693 0.90103 1.98533 1.96901 1.54297 1.44223 0.93100 0.76754 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.70 13.06 21.65 0.28 -53.42 14 2 C -0.04 -2.19 5.50 84.86 0.47 -1.72 14 3 Si 0.98 43.40 29.55 68.60 2.03 45.43 14 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 14 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 14 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 14 7 C -0.28 -14.54 9.68 84.03 0.81 -13.73 14 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 14 9 N -0.72 -34.40 4.58 -342.58 -1.57 -35.97 14 10 C 0.57 22.46 2.00 85.63 0.17 22.64 14 11 F -0.20 -8.38 16.27 44.97 0.73 -7.65 14 12 F -0.20 -7.56 15.83 44.97 0.71 -6.85 14 13 C -0.24 -8.15 5.14 -19.67 -0.10 -8.25 14 14 C 0.23 6.24 10.69 84.68 0.91 7.15 14 15 N -0.50 -13.39 10.40 -190.76 -1.98 -15.37 14 16 C 0.38 10.71 8.18 180.81 1.48 12.19 14 17 Cl 0.07 1.47 29.27 -2.72 -0.08 1.39 14 18 N -0.51 -16.19 10.40 -181.61 -1.89 -18.08 14 19 C 0.26 9.05 7.09 84.73 0.60 9.65 14 20 Cl 0.03 1.14 26.49 -2.72 -0.07 1.07 14 21 H 0.26 14.26 8.31 -92.71 -0.77 13.49 14 22 H 0.40 19.79 7.02 -92.71 -0.65 19.13 14 23 H 0.23 4.65 7.26 -2.91 -0.02 4.63 14 Total: -1.00 -57.70 255.88 3.15 -54.55 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.66 Total: 6.97 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 4.34 Total: 27.92 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.16 Total: -122.85 kcal Atomic # 9 Polarization: -15.94 SS G_CDS: 1.44 Total: -14.50 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: 2.62 SS G_CDS: -0.15 Total: 2.46 kcal Total: -57.70 3.15 -54.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530965.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.116 kcal (2) G-P(sol) polarization free energy of solvation -57.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds