Wall clock time and date at job start Tue Mar 31 2020 05:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99937 * 2 1 4 4 H 1.48505 * 109.47111 * 269.99701 * 3 2 1 5 5 H 1.48498 * 109.47322 * 29.99723 * 3 2 1 6 6 H 1.48499 * 109.47036 * 150.00005 * 3 2 1 7 7 C 1.38813 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99559 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00136 * 179.97438 * 9 7 2 11 11 F 1.39900 * 109.46859 * 60.00060 * 10 9 7 12 12 F 1.39901 * 109.47223 * 300.00235 * 10 9 7 13 13 C 1.50696 * 109.47444 * 179.97438 * 10 9 7 14 14 N 1.31792 * 119.10779 * 109.99964 * 13 10 9 15 15 C 1.32488 * 120.82834 * 180.02562 * 14 13 10 16 16 Cl 1.73607 * 120.45318 * 179.97438 * 15 14 13 17 17 C 1.38698 * 119.09393 * 359.97438 * 15 14 13 18 18 C 1.38697 * 118.37340 * 0.25491 * 17 15 14 19 19 Cl 1.73606 * 120.45258 * 179.72990 * 18 17 15 20 20 N 1.31780 * 119.11168 * 290.02685 * 13 10 9 21 21 H 0.96998 * 119.99625 * 359.97438 * 1 2 3 22 22 H 0.96998 * 119.99943 * 0.02562 * 9 7 2 23 23 H 1.08002 * 120.81001 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 9 2.8631 -3.7304 1.1433 12 9 2.8615 -3.7315 -1.1412 13 6 1.0787 -4.8023 0.0035 14 7 0.9602 -5.5462 -1.0779 15 6 0.1096 -6.5613 -1.1138 16 17 -0.0391 -7.5346 -2.5437 17 6 -0.6604 -6.8359 0.0066 18 6 -0.5106 -6.0274 1.1236 19 17 -1.4523 -6.3181 2.5528 20 7 0.3637 -5.0326 1.0862 21 1 -0.4849 0.8401 0.0004 22 1 0.3556 -2.3881 0.0016 23 1 -1.3628 -7.6563 0.0077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531764.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:53 Heat of formation + Delta-G solvation = -54.708415 kcal Electronic energy + Delta-G solvation = -17585.833898 eV Core-core repulsion = 13964.224864 eV Total energy + Delta-G solvation = -3621.609034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.979 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.86572 -47.98819 -42.63574 -38.38169 -38.17042 -36.50964 -35.10403 -34.11810 -32.62675 -28.42904 -26.05534 -25.78745 -23.64581 -20.39397 -19.90270 -19.07504 -18.55323 -18.00914 -17.42543 -16.78297 -16.68427 -16.20905 -16.07311 -15.26735 -14.80022 -14.34977 -14.27513 -14.24089 -13.82272 -13.27430 -13.08728 -12.94628 -12.92347 -12.61043 -12.29782 -12.23770 -11.89791 -11.65140 -11.60059 -11.06792 -10.96335 -9.79763 -8.16876 -5.63875 -1.01126 -0.73156 -0.11669 0.37573 1.45127 1.49677 1.55043 1.61773 1.83714 2.42866 2.64512 2.83631 3.05664 3.18771 3.37835 3.55878 3.75989 4.23006 4.26152 5.11598 5.29610 5.89828 6.18598 7.03921 7.39419 7.77427 9.04020 Molecular weight = 282.98amu Principal moments of inertia in cm(-1) A = 0.018997 B = 0.005690 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.546771 B = 4919.350336 C = 5629.465957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.044 4.044 3 Si 0.991 3.009 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.286 4.286 8 H 0.081 0.919 9 N -0.719 5.719 10 C 0.583 3.417 11 F -0.199 7.199 12 F -0.192 7.192 13 C 0.310 3.690 14 N -0.496 5.496 15 C 0.222 3.778 16 Cl 0.037 6.963 17 C -0.151 4.151 18 C 0.222 3.778 19 Cl 0.034 6.966 20 N -0.494 5.494 21 H 0.263 0.737 22 H 0.395 0.605 23 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -17.812 -0.041 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.239 4.239 3 Si 0.816 3.184 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.416 4.416 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.454 3.546 11 F -0.180 7.180 12 F -0.174 7.174 13 C 0.039 3.961 14 N -0.213 5.213 15 C 0.049 3.951 16 Cl 0.066 6.934 17 C -0.174 4.174 18 C 0.049 3.951 19 Cl 0.063 6.937 20 N -0.212 5.212 21 H 0.072 0.928 22 H 0.232 0.768 23 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.693 -17.062 -0.033 17.457 hybrid contribution -0.422 0.216 0.009 0.474 sum -4.115 -16.846 -0.024 17.341 Atomic orbital electron populations 1.69816 1.06789 1.27529 1.55835 1.25780 0.96595 1.01540 0.99962 0.84935 0.77764 0.77640 0.78044 1.20380 1.20968 1.19144 1.19475 0.91878 0.83695 1.46525 0.90066 1.43268 1.06582 0.99472 1.87483 1.16974 0.78681 0.85155 0.73790 1.93068 1.76066 1.96493 1.52417 1.93070 1.75960 1.96455 1.51878 1.22403 0.94922 0.94317 0.84475 1.67493 1.20382 1.05636 1.27770 1.22325 0.91120 0.90511 0.91117 1.98466 1.95794 1.64547 1.34582 1.22950 1.01870 1.03044 0.89553 1.22342 0.91280 0.90278 0.91218 1.98467 1.66688 1.93652 1.34871 1.67449 1.06442 1.18950 1.28315 0.92816 0.76842 0.75940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.88 13.06 21.65 0.28 -56.60 14 2 C -0.04 -2.51 5.50 84.86 0.47 -2.05 14 3 Si 0.99 45.40 29.55 68.60 2.03 47.43 14 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 14 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 14 7 C -0.29 -16.49 9.68 84.03 0.81 -15.67 14 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 14 9 N -0.72 -38.96 5.48 -342.61 -1.88 -40.84 14 10 C 0.58 27.68 2.52 85.63 0.22 27.89 14 11 F -0.20 -9.50 17.01 44.97 0.76 -8.73 14 12 F -0.19 -9.16 16.60 44.97 0.75 -8.41 14 13 C 0.31 12.43 6.73 138.75 0.93 13.36 14 14 N -0.50 -17.54 9.80 -178.80 -1.75 -19.29 14 15 C 0.22 5.71 7.33 84.70 0.62 6.33 14 16 Cl 0.04 0.73 29.16 -2.72 -0.08 0.65 14 17 C -0.15 -3.06 9.79 22.49 0.22 -2.84 14 18 C 0.22 5.92 7.33 84.70 0.62 6.54 14 19 Cl 0.03 0.73 29.16 -2.72 -0.08 0.65 14 20 N -0.49 -18.14 10.27 -178.80 -1.84 -19.97 14 21 H 0.26 14.92 8.31 -92.71 -0.77 14.15 14 22 H 0.40 22.24 7.66 -92.71 -0.71 21.53 14 23 H 0.22 2.11 8.06 -2.91 -0.02 2.09 14 Total: -1.00 -66.63 262.14 2.68 -63.95 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.59 Total: 7.59 kcal Atomic # 6 Polarization: 29.68 SS G_CDS: 3.89 Total: 33.57 kcal Atomic # 7 Polarization: -131.51 SS G_CDS: -5.18 Total: -136.70 kcal Atomic # 9 Polarization: -18.66 SS G_CDS: 1.51 Total: -17.15 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: 1.46 SS G_CDS: -0.16 Total: 1.30 kcal Total: -66.63 2.68 -63.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531764.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.238 kcal (2) G-P(sol) polarization free energy of solvation -66.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds