Wall clock time and date at job start Tue Mar 31 2020 05:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 120.00301 * 2 1 4 4 H 1.48501 * 109.46944 * 239.99915 * 3 2 1 5 5 H 1.48496 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47311 * 119.99609 * 3 2 1 7 7 C 1.38863 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00534 * 180.02562 * 7 2 1 9 9 N 1.36810 * 119.99595 * 0.02562 * 7 2 1 10 10 C 1.38255 * 119.99658 * 179.97438 * 9 7 2 11 11 N 1.32014 * 120.09507 * 359.97438 * 10 9 7 12 12 C 1.32543 * 122.70170 * 179.97438 * 11 10 9 13 13 Cl 1.73599 * 119.08299 * 180.02562 * 12 11 10 14 14 C 1.36462 * 121.82835 * 0.28507 * 12 11 10 15 15 C 1.40592 * 118.83976 * 359.45703 * 14 12 11 16 16 C 1.40674 * 122.26385 * 180.25713 * 15 14 12 17 17 Cl 1.73596 * 121.02966 * 0.24401 * 16 15 14 18 18 C 1.36862 * 117.93630 * 180.26923 * 16 15 14 19 19 C 1.39247 * 119.89772 * 359.97438 * 18 16 15 20 20 N 1.31236 * 121.84048 * 359.97438 * 19 18 16 21 21 C 1.33266 * 121.24083 * 0.04317 * 20 19 18 22 22 H 0.97000 * 119.99727 * 0.02562 * 1 2 3 23 23 H 0.97003 * 120.00034 * 359.97438 * 9 7 2 24 24 H 1.07998 * 120.57605 * 179.69169 * 14 12 11 25 25 H 1.07999 * 120.05288 * 180.02562 * 18 16 15 26 26 H 1.07997 * 119.07964 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0096 -1.2026 0.0005 8 1 3.0895 -1.2026 0.0010 9 7 1.3255 -2.3874 0.0005 10 6 2.0168 -3.5847 0.0005 11 7 3.3369 -3.5868 0.0000 12 6 4.0512 -4.7033 0.0005 13 17 5.7839 -4.5966 0.0004 14 6 3.4623 -5.9344 -0.0042 15 6 2.0587 -6.0148 0.0020 16 6 1.3770 -7.2453 0.0030 17 17 2.2446 -8.7489 0.0030 18 6 0.0086 -7.2202 0.0035 19 6 -0.6632 -6.0005 0.0035 20 7 -0.0207 -4.8562 0.0035 21 6 1.3112 -4.8113 0.0027 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3873 0.0005 24 1 4.0640 -6.8312 -0.0087 25 1 -0.5493 -8.1449 0.0048 26 1 -1.7432 -5.9961 0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533448.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:51 Heat of formation + Delta-G solvation = 45.772879 kcal Electronic energy + Delta-G solvation = -16862.526927 eV Core-core repulsion = 13799.504618 eV Total energy + Delta-G solvation = -3063.022308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36502 -37.59606 -36.41025 -36.13757 -35.27026 -32.97318 -31.52865 -30.78547 -28.46002 -25.56977 -23.71153 -23.43607 -21.25533 -18.98153 -17.97148 -17.13067 -16.68659 -15.73550 -14.94751 -14.57963 -14.47610 -14.13657 -13.55477 -13.29498 -12.91295 -12.81726 -12.14643 -12.10919 -11.95838 -11.75221 -11.19027 -11.08016 -10.75978 -10.65078 -10.52772 -10.20273 -9.58329 -9.19433 -8.89206 -8.71133 -8.56916 -7.28085 -7.02868 -4.19827 0.92207 1.40044 2.40932 2.44969 2.58564 2.89724 2.93706 2.95103 3.60879 3.61018 4.37445 4.44354 4.83075 4.92251 5.09607 5.37341 5.49107 5.79181 5.95506 6.15660 6.26804 6.42873 6.67765 6.77013 6.97233 7.08658 7.38019 8.03260 8.30887 8.49668 8.64768 9.23024 9.81691 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.005955 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.365756 B = 4700.686204 C = 6185.208435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.256 4.256 8 H 0.132 0.868 9 N -0.440 5.440 10 C 0.338 3.662 11 N -0.575 5.575 12 C 0.282 3.718 13 Cl -0.069 7.069 14 C -0.327 4.327 15 C 0.022 3.978 16 C -0.044 4.044 17 Cl -0.069 7.069 18 C -0.131 4.131 19 C 0.051 3.949 20 N -0.446 5.446 21 C 0.061 3.939 22 H 0.293 0.707 23 H 0.423 0.577 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -7.304 0.005 7.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.391 4.391 8 H 0.150 0.850 9 N -0.036 5.036 10 C 0.086 3.914 11 N -0.302 5.302 12 C 0.113 3.887 13 Cl -0.041 7.041 14 C -0.357 4.357 15 C 0.014 3.986 16 C -0.079 4.079 17 Cl -0.040 7.040 18 C -0.152 4.152 19 C -0.115 4.115 20 N -0.157 5.157 21 C -0.076 4.076 22 H 0.104 0.896 23 H 0.262 0.738 24 H 0.145 0.855 25 H 0.151 0.849 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.650 -5.268 0.005 5.308 hybrid contribution 0.103 -1.049 0.001 1.055 sum 0.754 -6.317 0.007 6.362 Atomic orbital electron populations 1.69681 1.06741 1.31114 1.39167 1.25929 0.95996 1.01740 0.95133 0.85523 0.78966 0.77571 0.80350 1.18565 1.20017 1.18560 1.20625 0.95231 0.81573 1.41631 0.84995 1.41302 1.09900 1.02545 1.49857 1.17196 0.86567 0.83802 1.03844 1.65873 1.05150 1.29553 1.29581 1.20316 0.84829 0.89206 0.94308 1.98327 1.10530 1.98727 1.96548 1.20189 0.92246 0.96626 1.26684 1.18040 0.94276 0.91077 0.95183 1.20442 0.92005 0.86115 1.09360 1.98314 1.77491 1.31215 1.97024 1.21617 0.92662 1.00153 1.00799 1.22313 0.99738 0.86435 1.03035 1.67524 1.08124 1.29914 1.10117 1.19040 0.89412 0.92436 1.06684 0.89641 0.73755 0.85495 0.84868 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.48 13.05 55.49 0.72 -18.76 15 2 C 0.02 0.54 5.50 -17.45 -0.10 0.44 15 3 Si 0.95 17.55 29.55 -169.99 -5.02 12.53 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.39 15 5 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 15 7 C -0.26 -6.12 9.70 -15.10 -0.15 -6.27 15 8 H 0.13 3.18 7.09 -52.49 -0.37 2.81 15 9 N -0.44 -10.52 5.39 -10.83 -0.06 -10.58 15 10 C 0.34 7.94 7.50 -155.16 -1.16 6.78 15 11 N -0.58 -13.43 9.01 -9.52 -0.09 -13.52 15 12 C 0.28 5.96 7.21 -17.89 -0.13 5.83 15 13 Cl -0.07 -1.25 29.06 -51.86 -1.51 -2.76 15 14 C -0.33 -6.55 9.27 -39.33 -0.36 -6.92 15 15 C 0.02 0.44 5.75 -106.78 -0.61 -0.18 15 16 C -0.04 -0.76 6.37 -39.16 -0.25 -1.01 15 17 Cl -0.07 -1.04 27.79 -51.86 -1.44 -2.48 15 18 C -0.13 -2.01 9.85 -39.70 -0.39 -2.40 15 19 C 0.05 0.84 11.14 -17.43 -0.19 0.64 15 20 N -0.45 -9.07 9.65 -10.82 -0.10 -9.18 15 21 C 0.06 1.33 6.64 -84.69 -0.56 0.76 15 22 H 0.29 6.28 8.31 -40.82 -0.34 5.94 15 23 H 0.42 10.13 7.29 -40.82 -0.30 9.84 15 24 H 0.13 2.33 7.20 -52.49 -0.38 1.95 15 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 26 H 0.15 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -24.69 269.76 -8.37 -33.06 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -1.03 Total: 9.94 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.91 Total: -2.31 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.48 Total: -52.03 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -2.95 Total: -5.24 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -24.69 -8.37 -33.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533448.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.829 kcal (2) G-P(sol) polarization free energy of solvation -24.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds