Wall clock time and date at job start Tue Mar 31 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31475 * 1 3 3 Si 1.86797 * 119.99657 * 2 1 4 4 H 1.48507 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47476 * 300.00182 * 3 2 1 6 6 H 1.48499 * 109.47470 * 60.00079 * 3 2 1 7 7 C 1.38913 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00494 * 179.97438 * 7 2 1 9 9 N 1.36849 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.37839 * 119.99729 * 179.97438 * 9 7 2 11 11 N 1.32743 * 120.90543 * 353.59786 * 10 9 7 12 12 C 1.32381 * 121.47145 * 180.02562 * 11 10 9 13 13 Cl 1.73605 * 118.52592 * 180.02562 * 12 11 10 14 14 N 1.31392 * 122.94281 * 0.02562 * 12 11 10 15 15 C 1.34092 * 120.45855 * 359.97438 * 14 12 11 16 16 C 1.40148 * 121.98394 * 180.02562 * 15 14 12 17 17 C 1.36356 * 119.61696 * 179.97438 * 16 15 14 18 18 C 1.39154 * 121.04852 * 0.02562 * 17 16 15 19 19 C 1.36562 * 120.88354 * 0.02562 * 18 17 16 20 20 Cl 1.73598 * 120.26335 * 180.02562 * 19 18 17 21 21 C 1.40017 * 119.47714 * 359.97438 * 19 18 17 22 22 H 0.97005 * 120.00163 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00259 * 0.02562 * 9 7 2 24 24 H 1.08005 * 120.19256 * 359.96078 * 16 15 14 25 25 H 1.08002 * 119.47599 * 180.02562 * 17 16 15 26 26 H 1.07997 * 119.55828 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7087 1.3465 -0.0006 5 1 1.8899 2.3965 -1.2125 6 1 1.8899 2.3965 1.2125 7 6 2.0094 -1.2030 -0.0005 8 1 3.0893 -1.2030 -0.0010 9 7 1.3251 -2.3881 -0.0005 10 6 2.0144 -3.5818 -0.0016 11 7 3.3354 -3.6062 -0.1296 12 6 4.0085 -4.7461 -0.1326 13 17 5.7351 -4.6889 -0.3042 14 7 3.4284 -5.9188 -0.0116 15 6 2.0973 -6.0080 0.1237 16 6 1.4455 -7.2416 0.2557 17 6 0.0891 -7.2760 0.3909 18 6 -0.6613 -6.1042 0.3997 19 6 -0.0590 -4.8852 0.2723 20 17 -1.0107 -3.4334 0.2861 21 6 1.3324 -4.8155 0.1317 22 1 -0.4850 0.8401 0.0004 23 1 0.3552 -2.3882 -0.0005 24 1 2.0142 -8.1598 0.2500 25 1 -0.4108 -8.2280 0.4929 26 1 -1.7343 -6.1594 0.5087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533914.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:34 Heat of formation + Delta-G solvation = 61.715724 kcal Electronic energy + Delta-G solvation = -17181.426917 eV Core-core repulsion = 14119.095943 eV Total energy + Delta-G solvation = -3062.330975 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33945 -37.24341 -36.97019 -36.13650 -35.32927 -33.16632 -31.32736 -30.42252 -28.98050 -25.70356 -23.64693 -23.10855 -21.26469 -19.06257 -18.37817 -16.97429 -16.63307 -15.37551 -15.22840 -14.67382 -14.56058 -14.21870 -13.78873 -13.58572 -12.76701 -12.22049 -12.19977 -11.94394 -11.61989 -11.39791 -11.33109 -11.14290 -10.71717 -10.67507 -10.39174 -10.29018 -9.71780 -9.57209 -8.75124 -8.54047 -8.10824 -7.29869 -7.28293 -4.27447 1.00330 1.50460 2.28684 2.38930 2.47545 2.89713 2.92278 2.98274 3.56402 3.61430 4.41326 4.45460 4.96403 5.11571 5.27450 5.39587 5.52805 5.71289 5.98205 6.23617 6.38110 6.52727 6.75945 6.78359 6.87002 7.13563 7.42441 7.90495 8.13715 8.59790 8.75694 9.34182 9.81162 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.008404 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.399928 B = 3330.820997 C = 5300.634665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.027 3.973 3 Si 0.951 3.049 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.130 0.870 9 N -0.449 5.449 10 C 0.323 3.677 11 N -0.597 5.597 12 C 0.435 3.565 13 Cl -0.022 7.022 14 N -0.622 5.622 15 C 0.237 3.763 16 C -0.143 4.143 17 C -0.069 4.069 18 C -0.172 4.172 19 C 0.000 4.000 20 Cl -0.035 7.035 21 C -0.182 4.182 22 H 0.291 0.709 23 H 0.411 0.589 24 H 0.132 0.868 25 H 0.127 0.873 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -5.106 0.537 5.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.185 4.185 3 Si 0.774 3.226 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.397 4.397 8 H 0.148 0.852 9 N -0.066 5.066 10 C 0.070 3.930 11 N -0.333 5.333 12 C 0.135 3.865 13 Cl 0.005 6.995 14 N -0.357 5.357 15 C 0.110 3.890 16 C -0.165 4.165 17 C -0.090 4.090 18 C -0.194 4.194 19 C -0.030 4.030 20 Cl -0.006 7.006 21 C -0.193 4.193 22 H 0.102 0.898 23 H 0.272 0.728 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.090 -4.409 0.428 4.562 hybrid contribution -0.880 0.999 0.040 1.332 sum -1.970 -3.410 0.469 3.966 Atomic orbital electron populations 1.69664 1.06843 1.30864 1.39678 1.25912 0.95950 1.01705 0.94899 0.85441 0.80240 0.78242 0.78699 1.17789 1.19572 1.19587 1.20759 0.95372 0.82054 1.41530 0.85209 1.43478 1.11817 1.02586 1.48727 1.17756 0.87699 0.84920 1.02615 1.66953 1.06764 1.28809 1.30763 1.22030 0.87282 0.85418 0.91731 1.98333 1.07129 1.98464 1.95561 1.68170 1.08556 1.25548 1.33385 1.18323 0.88265 0.91245 0.91128 1.20433 0.93894 0.96082 1.06111 1.20577 0.93503 0.97228 0.97689 1.20315 1.00034 0.90369 1.08672 1.20552 0.90370 0.87623 1.04410 1.98199 1.69810 1.35869 1.96697 1.18633 0.92393 0.95618 1.12633 0.89807 0.72806 0.85030 0.85504 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.54 13.05 55.49 0.72 -18.82 15 2 C 0.03 0.62 5.50 -17.45 -0.10 0.52 15 3 Si 0.95 17.73 29.55 -169.99 -5.02 12.71 15 4 H -0.25 -4.75 7.11 56.52 0.40 -4.35 15 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 6 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 7 C -0.26 -6.45 9.71 -15.06 -0.15 -6.60 15 8 H 0.13 3.24 7.14 -52.49 -0.37 2.87 15 9 N -0.45 -11.01 5.17 -10.74 -0.06 -11.07 15 10 C 0.32 7.89 7.48 -154.91 -1.16 6.73 15 11 N -0.60 -14.69 9.20 -10.60 -0.10 -14.78 15 12 C 0.43 9.94 8.15 -91.99 -0.75 9.19 15 13 Cl -0.02 -0.43 29.24 -51.86 -1.52 -1.94 15 14 N -0.62 -13.91 10.40 -9.71 -0.10 -14.01 15 15 C 0.24 5.04 6.61 -84.85 -0.56 4.48 15 16 C -0.14 -2.45 10.01 -39.54 -0.40 -2.85 15 17 C -0.07 -1.02 9.95 -39.92 -0.40 -1.42 15 18 C -0.17 -2.77 9.74 -39.85 -0.39 -3.15 15 19 C 0.00 0.00 6.32 -39.52 -0.25 -0.25 15 20 Cl -0.03 -0.67 24.53 -51.86 -1.27 -1.94 15 21 C -0.18 -4.06 5.76 -106.64 -0.61 -4.67 15 22 H 0.29 6.20 8.31 -40.82 -0.34 5.86 15 23 H 0.41 9.64 2.69 -40.82 -0.11 9.53 15 24 H 0.13 1.98 8.06 -52.48 -0.42 1.56 15 25 H 0.13 1.37 8.06 -52.49 -0.42 0.94 15 26 H 0.13 1.67 8.06 -52.49 -0.42 1.24 15 LS Contribution 263.99 15.07 3.98 3.98 Total: -1.00 -26.37 263.99 -9.01 -35.38 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -0.89 Total: 8.52 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -4.76 Total: 1.98 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.47 Total: -58.69 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.02 Total: 12.71 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.79 Total: -3.89 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.37 -9.01 -35.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533914.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.093 kcal (2) G-P(sol) polarization free energy of solvation -26.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds