Wall clock time and date at job start Tue Mar 31 2020 05:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86806 * 119.99554 * 2 1 4 4 H 1.48502 * 109.47317 * 270.00290 * 3 2 1 5 5 H 1.48493 * 109.47187 * 30.00616 * 3 2 1 6 6 H 1.48507 * 109.46880 * 150.00378 * 3 2 1 7 7 C 1.38776 * 120.00553 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36748 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.38949 * 119.99859 * 175.87766 * 9 7 2 11 11 C 1.38375 * 120.36061 * 95.12178 * 10 9 7 12 12 Cl 1.73601 * 119.60658 * 359.95577 * 11 10 9 13 13 C 1.39105 * 120.79163 * 179.97438 * 11 10 9 14 14 C 1.36391 * 121.05247 * 0.02562 * 13 11 10 15 15 C 1.40222 * 119.84340 * 359.97438 * 14 13 11 16 16 C 1.40849 * 122.02291 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 120.83762 * 359.75770 * 16 15 14 18 18 N 1.31943 * 118.32270 * 180.02562 * 16 15 14 19 19 C 1.32472 * 121.58700 * 0.02562 * 18 16 15 20 20 N 1.31193 * 122.83821 * 359.97438 * 19 18 16 21 21 C 1.33751 * 120.31112 * 0.02562 * 20 19 18 22 22 H 0.96995 * 120.00468 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00124 * 355.87144 * 9 7 2 24 24 H 1.08003 * 119.47605 * 180.02562 * 13 11 10 25 25 H 1.08001 * 120.07555 * 180.02562 * 14 13 11 26 26 H 1.08006 * 118.58088 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 2.4973 2.0466 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5475 1.4403 0.7000 7 6 2.0099 -1.2018 -0.0005 8 1 3.0899 -1.2017 -0.0010 9 7 1.3263 -2.3861 -0.0005 10 6 2.0184 -3.5878 -0.0876 11 6 2.3491 -4.2890 1.0586 12 17 1.8950 -3.6583 2.6109 13 6 3.0413 -5.4932 0.9818 14 6 3.4133 -6.0153 -0.2220 15 6 3.0964 -5.3342 -1.4060 16 6 3.4584 -5.8310 -2.6732 17 17 4.3296 -7.3246 -2.8279 18 7 3.1235 -5.1298 -3.7396 19 6 2.4638 -3.9854 -3.6384 20 7 2.1002 -3.4733 -2.4866 21 6 2.3913 -4.1057 -1.3446 22 1 -0.4850 0.8400 0.0004 23 1 0.3582 -2.3873 0.0603 24 1 3.2881 -6.0231 1.8900 25 1 3.9500 -6.9517 -0.2632 26 1 2.2139 -3.4514 -4.5434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155537664.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:16 Heat of formation + Delta-G solvation = 70.471144 kcal Electronic energy + Delta-G solvation = -17067.750238 eV Core-core repulsion = 14005.798927 eV Total energy + Delta-G solvation = -3061.951311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71779 -37.58305 -36.59863 -35.52751 -35.21665 -33.13847 -31.80729 -30.40786 -28.32248 -24.87572 -24.24698 -23.60981 -21.06721 -18.33829 -18.07406 -17.78306 -16.82427 -15.27560 -14.86465 -14.80999 -14.64711 -14.18835 -13.83352 -13.52431 -12.51899 -12.38695 -12.09302 -11.96330 -11.64421 -11.32294 -11.27895 -10.75493 -10.71384 -10.50637 -10.38077 -10.11419 -10.07254 -9.72961 -8.81501 -8.45849 -8.04224 -7.49779 -6.69010 -3.52135 0.42760 1.14190 1.91782 2.18869 2.90581 3.08326 3.12649 3.14515 3.32221 3.96263 4.48278 4.57699 4.70289 4.87379 4.97022 5.10885 5.36519 5.53747 5.81965 6.12862 6.23531 6.55934 6.69988 6.83551 6.96949 7.08651 7.40168 7.60881 8.56646 8.58239 9.28765 9.45366 10.43958 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.006431 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.072217 B = 4352.713453 C = 5458.203727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C -0.002 4.002 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.181 4.181 8 H 0.093 0.907 9 N -0.595 5.595 10 C 0.173 3.827 11 C -0.080 4.080 12 Cl -0.070 7.070 13 C -0.061 4.061 14 C -0.164 4.164 15 C -0.106 4.106 16 C 0.209 3.791 17 Cl -0.032 7.032 18 N -0.521 5.521 19 C 0.267 3.733 20 N -0.472 5.472 21 C 0.168 3.832 22 H 0.278 0.722 23 H 0.402 0.598 24 H 0.126 0.874 25 H 0.130 0.870 26 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -8.392 0.018 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.207 4.207 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.312 4.312 8 H 0.111 0.889 9 N -0.214 5.214 10 C 0.061 3.939 11 C -0.116 4.116 12 Cl -0.041 7.041 13 C -0.081 4.081 14 C -0.188 4.188 15 C -0.112 4.112 16 C 0.025 3.975 17 Cl -0.004 7.004 18 N -0.238 5.238 19 C -0.021 4.021 20 N -0.187 5.187 21 C 0.034 3.966 22 H 0.088 0.912 23 H 0.240 0.760 24 H 0.144 0.856 25 H 0.148 0.852 26 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 4.365 -7.420 -0.656 8.634 hybrid contribution 0.270 0.213 0.537 0.638 sum 4.635 -7.207 -0.118 8.570 Atomic orbital electron populations 1.69667 1.06067 1.28851 1.44893 1.25329 0.95912 0.99783 0.99697 0.85796 0.79201 0.80568 0.78690 1.20177 1.20559 1.19287 1.19956 0.92467 0.82743 1.36003 0.88909 1.40039 1.07219 0.99848 1.74314 1.16612 0.99672 0.89289 0.88345 1.21104 1.05436 0.99096 0.85949 1.98314 1.91591 1.87281 1.26929 1.20500 0.96373 0.93186 0.98043 1.20290 1.06710 1.01511 0.90296 1.19036 1.01379 0.97001 0.93816 1.21898 0.96203 0.90169 0.89219 1.98362 1.74021 1.29925 1.98100 1.67428 1.14505 1.08551 1.33332 1.24545 0.92869 0.88562 0.96112 1.68636 1.19371 1.32816 0.97852 1.19570 0.94133 0.89572 0.93368 0.91192 0.75983 0.85586 0.85233 0.79150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.81 13.06 55.49 0.72 -21.08 15 2 C 0.00 -0.06 5.50 -17.45 -0.10 -0.15 15 3 Si 0.93 19.25 29.55 -169.99 -5.02 14.23 15 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.18 -4.42 9.90 -15.16 -0.15 -4.57 15 8 H 0.09 2.26 7.83 -52.49 -0.41 1.85 15 9 N -0.59 -13.84 4.42 -9.42 -0.04 -13.88 15 10 C 0.17 3.68 5.90 -83.55 -0.49 3.19 15 11 C -0.08 -1.51 6.34 -39.21 -0.25 -1.76 15 12 Cl -0.07 -1.27 28.39 -51.86 -1.47 -2.75 15 13 C -0.06 -0.97 9.71 -39.93 -0.39 -1.36 15 14 C -0.16 -2.62 9.48 -39.50 -0.37 -2.99 15 15 C -0.11 -1.96 5.74 -106.81 -0.61 -2.57 15 16 C 0.21 3.66 7.41 -16.52 -0.12 3.54 15 17 Cl -0.03 -0.46 27.88 -51.86 -1.45 -1.91 15 18 N -0.52 -9.45 10.39 -11.24 -0.12 -9.57 15 19 C 0.27 4.89 12.23 -92.08 -1.13 3.76 15 20 N -0.47 -10.00 10.23 -12.45 -0.13 -10.13 15 21 C 0.17 3.51 6.63 -84.64 -0.56 2.95 15 22 H 0.28 6.69 8.31 -40.82 -0.34 6.35 15 23 H 0.40 9.81 8.02 -40.82 -0.33 9.49 15 24 H 0.13 1.64 8.06 -52.48 -0.42 1.22 15 25 H 0.13 1.73 7.12 -52.49 -0.37 1.36 15 26 H 0.19 2.83 8.06 -52.48 -0.42 2.41 15 LS Contribution 271.46 15.07 4.09 4.09 Total: -1.00 -25.37 271.46 -8.68 -34.05 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -1.09 Total: 6.90 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -4.17 Total: 0.04 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.44 Total: -54.65 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.92 Total: -4.65 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.37 -8.68 -34.05 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537664.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.520 kcal (2) G-P(sol) polarization free energy of solvation -25.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds