Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31593 * 1 3 3 Si 1.86806 * 119.99554 * 2 1 4 4 H 1.48502 * 109.47317 * 270.00290 * 3 2 1 5 5 H 1.48493 * 109.47187 * 30.00616 * 3 2 1 6 6 H 1.48507 * 109.46880 * 150.00378 * 3 2 1 7 7 C 1.38776 * 120.00553 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.36748 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.38949 * 119.99859 * 175.87766 * 9 7 2 11 11 C 1.38375 * 120.36061 * 95.12178 * 10 9 7 12 12 Cl 1.73601 * 119.60658 * 359.95577 * 11 10 9 13 13 C 1.39105 * 120.79163 * 179.97438 * 11 10 9 14 14 C 1.36391 * 121.05247 * 0.02562 * 13 11 10 15 15 C 1.40222 * 119.84340 * 359.97438 * 14 13 11 16 16 C 1.40849 * 122.02291 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 120.83762 * 359.75770 * 16 15 14 18 18 N 1.31943 * 118.32270 * 180.02562 * 16 15 14 19 19 C 1.32472 * 121.58700 * 0.02562 * 18 16 15 20 20 N 1.31193 * 122.83821 * 359.97438 * 19 18 16 21 21 C 1.33751 * 120.31112 * 0.02562 * 20 19 18 22 22 H 0.96995 * 120.00468 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00124 * 355.87144 * 9 7 2 24 24 H 1.08003 * 119.47605 * 180.02562 * 13 11 10 25 25 H 1.08001 * 120.07555 * 180.02562 * 14 13 11 26 26 H 1.08006 * 118.58088 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 2.4973 2.0466 -1.4001 5 1 1.4473 2.6527 0.7001 6 1 3.5475 1.4403 0.7000 7 6 2.0099 -1.2018 -0.0005 8 1 3.0899 -1.2017 -0.0010 9 7 1.3263 -2.3861 -0.0005 10 6 2.0184 -3.5878 -0.0876 11 6 2.3491 -4.2890 1.0586 12 17 1.8950 -3.6583 2.6109 13 6 3.0413 -5.4932 0.9818 14 6 3.4133 -6.0153 -0.2220 15 6 3.0964 -5.3342 -1.4060 16 6 3.4584 -5.8310 -2.6732 17 17 4.3296 -7.3246 -2.8279 18 7 3.1235 -5.1298 -3.7396 19 6 2.4638 -3.9854 -3.6384 20 7 2.1002 -3.4733 -2.4866 21 6 2.3913 -4.1057 -1.3446 22 1 -0.4850 0.8400 0.0004 23 1 0.3582 -2.3873 0.0603 24 1 3.2881 -6.0231 1.8900 25 1 3.9500 -6.9517 -0.2632 26 1 2.2139 -3.4514 -4.5434 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537664.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = 55.260293 kcal Electronic energy + Delta-G solvation = -17068.409830 eV Core-core repulsion = 14005.798927 eV Total energy + Delta-G solvation = -3062.610903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38836 -39.22816 -38.08482 -37.14687 -36.65801 -34.70417 -33.24708 -32.04198 -29.88995 -26.39777 -25.84118 -25.24750 -22.63136 -19.91456 -19.50698 -19.38273 -18.34176 -16.87588 -16.47454 -16.40204 -16.21136 -15.66951 -15.36964 -15.05651 -14.02253 -13.96813 -13.66117 -13.46810 -13.12011 -12.88753 -12.69563 -12.32892 -12.26262 -12.03837 -11.92430 -11.65394 -11.60833 -11.24205 -10.41267 -10.03091 -9.45169 -9.14752 -8.03162 -5.35838 -0.99194 -0.51931 0.36302 0.65049 1.22551 1.45423 1.46754 1.54473 1.77054 2.48125 2.87592 2.98063 3.11120 3.33449 3.37905 3.54950 3.77676 4.08179 4.17625 4.55007 4.64819 4.95006 5.09385 5.18369 5.37076 5.47816 5.78890 6.18491 6.97878 7.20741 7.92726 8.04956 9.17282 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.006431 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.072217 B = 4352.713453 C = 5458.203727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.228 4.228 8 H 0.066 0.934 9 N -0.659 5.659 10 C 0.196 3.804 11 C -0.040 4.040 12 Cl -0.052 7.052 13 C -0.081 4.081 14 C -0.080 4.080 15 C -0.147 4.147 16 C 0.253 3.747 17 Cl 0.020 6.980 18 N -0.526 5.526 19 C 0.293 3.707 20 N -0.497 5.497 21 C 0.134 3.866 22 H 0.257 0.743 23 H 0.387 0.613 24 H 0.178 0.822 25 H 0.180 0.820 26 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.235 -15.561 -0.900 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.358 4.358 8 H 0.084 0.916 9 N -0.293 5.293 10 C 0.094 3.906 11 C -0.074 4.074 12 Cl -0.023 7.023 13 C -0.100 4.100 14 C -0.101 4.101 15 C -0.153 4.153 16 C 0.066 3.934 17 Cl 0.048 6.952 18 N -0.242 5.242 19 C 0.005 3.995 20 N -0.210 5.210 21 C 0.003 3.997 22 H 0.066 0.934 23 H 0.224 0.776 24 H 0.195 0.805 25 H 0.197 0.803 26 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 8.008 -14.746 -1.555 16.853 hybrid contribution -0.084 0.788 0.528 0.952 sum 7.924 -13.959 -1.027 16.084 Atomic orbital electron populations 1.69765 1.06471 1.26615 1.56980 1.25456 0.96238 1.00705 1.01925 0.85228 0.77949 0.79605 0.77474 1.21422 1.21569 1.19521 1.19124 0.90516 0.83623 1.42541 0.91648 1.39458 1.05736 0.99239 1.84852 1.17365 0.95198 0.88843 0.89157 1.22182 1.00903 0.97504 0.86778 1.98359 1.91157 1.87351 1.25402 1.21109 0.95902 0.92511 1.00460 1.21116 0.99499 1.00655 0.88849 1.19323 1.03265 0.97147 0.95556 1.22514 0.91873 0.90206 0.88828 1.98414 1.72217 1.26540 1.97981 1.67751 1.14629 1.08665 1.33200 1.25431 0.89736 0.87881 0.96472 1.68727 1.19824 1.33571 0.98879 1.19967 0.95352 0.90755 0.93668 0.93442 0.77642 0.80478 0.80320 0.75790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.28 13.06 21.64 0.28 -56.00 15 2 C -0.05 -2.74 5.50 84.86 0.47 -2.27 15 3 Si 0.97 45.49 29.55 68.60 2.03 47.52 15 4 H -0.29 -13.41 7.11 99.48 0.71 -12.71 15 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 15 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 7 C -0.23 -12.45 9.90 84.06 0.83 -11.62 15 8 H 0.07 3.58 7.83 -2.91 -0.02 3.56 15 9 N -0.66 -33.15 4.42 -183.70 -0.81 -33.97 15 10 C 0.20 8.25 5.90 38.72 0.23 8.47 15 11 C -0.04 -1.38 6.34 22.51 0.14 -1.24 15 12 Cl -0.05 -1.81 28.39 -2.72 -0.08 -1.89 15 13 C -0.08 -1.99 9.71 22.05 0.21 -1.78 15 14 C -0.08 -1.87 9.48 22.32 0.21 -1.65 15 15 C -0.15 -4.49 5.74 -21.28 -0.12 -4.61 15 16 C 0.25 7.13 7.41 85.32 0.63 7.76 15 17 Cl 0.02 0.40 27.88 -2.72 -0.08 0.33 15 18 N -0.53 -16.08 10.39 -189.49 -1.97 -18.05 15 19 C 0.29 9.66 12.23 180.86 2.21 11.87 15 20 N -0.50 -20.45 10.23 -193.30 -1.98 -22.43 15 21 C 0.13 5.27 6.63 40.40 0.27 5.54 15 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.39 21.08 8.02 -92.71 -0.74 20.34 15 24 H 0.18 2.92 8.06 -2.91 -0.02 2.90 15 25 H 0.18 2.71 7.12 -2.91 -0.02 2.69 15 26 H 0.23 5.80 8.06 -2.91 -0.02 5.78 15 Total: -1.00 -64.76 271.46 3.00 -61.76 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.52 Total: 12.26 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 5.08 Total: 10.47 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -4.48 Total: -130.44 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.15 Total: -1.56 kcal Total: -64.76 3.00 -61.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537664.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.016 kcal (2) G-P(sol) polarization free energy of solvation -64.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds