Wall clock time and date at job start Tue Mar 31 2020 05:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47239 * 240.27780 * 3 2 1 5 5 H 1.48505 * 109.47077 * 0.27740 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.27708 * 3 2 1 7 7 C 1.38835 * 120.00422 * 180.28055 * 2 1 3 8 8 H 1.07999 * 120.00260 * 179.72474 * 7 2 1 9 9 N 1.36821 * 119.99399 * 359.71807 * 7 2 1 10 10 C 1.38335 * 119.99948 * 180.02562 * 9 7 2 11 11 N 1.32244 * 120.61356 * 359.72378 * 10 9 7 12 12 N 1.28086 * 123.23680 * 179.68607 * 11 10 9 13 13 C 1.31529 * 123.49087 * 0.61526 * 12 11 10 14 14 Cl 1.73599 * 120.45066 * 179.67796 * 13 12 11 15 15 C 1.40810 * 119.09835 * 359.70257 * 13 12 11 16 16 C 1.40067 * 122.71613 * 180.02562 * 15 13 12 17 17 C 1.36331 * 119.39918 * 179.97438 * 16 15 13 18 18 C 1.39374 * 121.03461 * 359.97438 * 17 16 15 19 19 Cl 1.73604 * 119.49258 * 180.02562 * 18 17 16 20 20 C 1.36561 * 121.02078 * 359.97438 * 18 17 16 21 21 C 1.39773 * 119.40247 * 0.02562 * 20 18 17 22 22 H 0.97000 * 119.99800 * 359.72486 * 1 2 3 23 23 H 0.96999 * 120.00347 * 0.02562 * 9 7 2 24 24 H 1.07997 * 120.30063 * 359.97438 * 16 15 13 25 25 H 1.08006 * 119.48076 * 179.97438 * 17 16 15 26 26 H 1.07995 * 120.29802 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.0981 1.6994 -1.2159 5 1 1.2844 2.7465 0.0068 6 1 3.1082 1.6935 1.2090 7 6 2.0097 -1.2023 -0.0059 8 1 3.0897 -1.2022 -0.0104 9 7 1.3256 -2.3872 -0.0059 10 6 2.0172 -3.5852 -0.0112 11 7 3.3396 -3.5994 -0.0218 12 7 4.0301 -4.6781 -0.0213 13 6 3.4975 -5.8808 -0.0219 14 17 4.5097 -7.2912 -0.0296 15 6 2.0953 -6.0087 -0.0169 16 6 1.4485 -7.2511 -0.0166 17 6 0.0859 -7.2963 -0.0110 18 6 -0.6718 -6.1265 -0.0050 19 17 -2.4047 -6.2306 0.0026 20 6 -0.0721 -4.8996 -0.0041 21 6 1.3232 -4.8178 -0.0097 22 1 -0.4850 0.8401 0.0040 23 1 0.3556 -2.3872 -0.0021 24 1 2.0239 -8.1650 -0.0208 25 1 -0.4142 -8.2535 -0.0113 26 1 -0.6706 -4.0006 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537705.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:37 Heat of formation + Delta-G solvation = 40.882059 kcal Electronic energy + Delta-G solvation = -16830.077809 eV Core-core repulsion = 13766.843419 eV Total energy + Delta-G solvation = -3063.234390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.04442 -39.05984 -38.13505 -37.30581 -37.25170 -34.62732 -32.54048 -32.25572 -30.57173 -27.28595 -25.43403 -24.90302 -22.95064 -20.69367 -19.59904 -18.57825 -18.49426 -17.19768 -16.56929 -16.22195 -16.08979 -15.83309 -15.39977 -14.90736 -14.30715 -13.91538 -13.73648 -13.61483 -12.95876 -12.93746 -12.57669 -12.47274 -12.25256 -12.16983 -12.15332 -12.01409 -11.78983 -11.11950 -10.31972 -10.14763 -10.11183 -8.88292 -8.87239 -6.02093 -0.55609 -0.30377 0.76035 1.04524 1.06577 1.39916 1.47087 1.51031 1.95553 2.10909 2.65902 2.70381 3.15494 3.48887 3.56313 3.81041 3.92309 4.08393 4.29337 4.50685 4.67815 4.81936 5.03156 5.11234 5.18961 5.22040 5.53983 5.62146 6.40921 6.86404 7.03402 8.26062 8.38180 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.013763 B = 0.006488 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.951220 B = 4314.807340 C = 6338.914923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.004 4.004 3 Si 1.008 2.992 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.302 4.302 8 H 0.113 0.887 9 N -0.476 5.476 10 C 0.268 3.732 11 N -0.383 5.383 12 N -0.202 5.202 13 C -0.013 4.013 14 Cl -0.023 7.023 15 C -0.022 4.022 16 C -0.097 4.097 17 C -0.073 4.073 18 C -0.042 4.042 19 Cl -0.059 7.059 20 C -0.086 4.086 21 C -0.110 4.110 22 H 0.294 0.706 23 H 0.411 0.589 24 H 0.168 0.832 25 H 0.175 0.825 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -10.826 0.015 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.211 4.211 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.434 4.434 8 H 0.131 0.869 9 N -0.079 5.079 10 C 0.016 3.984 11 N -0.243 5.243 12 N -0.043 5.043 13 C -0.201 4.201 14 Cl 0.005 6.995 15 C -0.029 4.029 16 C -0.118 4.118 17 C -0.093 4.093 18 C -0.072 4.072 19 Cl -0.030 7.030 20 C -0.108 4.108 21 C -0.120 4.120 22 H 0.104 0.896 23 H 0.249 0.751 24 H 0.185 0.815 25 H 0.192 0.808 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.705 -9.493 0.006 9.871 hybrid contribution -1.414 0.061 0.011 1.416 sum -4.119 -9.432 0.018 10.292 Atomic orbital electron populations 1.69681 1.07411 1.31530 1.43095 1.26477 0.96644 1.03490 0.94443 0.84729 0.77829 0.74683 0.79842 1.18838 1.19074 1.18823 1.20383 0.94467 0.82404 1.46113 0.86887 1.40921 1.08642 1.02362 1.55971 1.19935 0.91641 0.86001 1.00826 1.72575 1.03864 1.16722 1.31181 1.71651 1.32813 0.94930 1.04884 1.22623 0.88581 0.90009 1.18884 1.98274 1.68840 1.34913 1.97521 1.18386 0.91893 0.94398 0.98180 1.21084 0.94384 0.96204 1.00086 1.21131 0.93094 0.98135 0.96904 1.20584 0.85417 0.94427 1.06728 1.98362 1.09089 1.98574 1.96954 1.20586 0.92180 0.98087 0.99901 1.18224 0.94270 0.92132 1.07365 0.89570 0.75098 0.81496 0.80768 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -41.85 13.05 21.65 0.28 -41.57 15 2 C 0.00 -0.20 5.50 84.88 0.47 0.27 15 3 Si 1.01 37.33 29.55 68.60 2.03 39.36 15 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.26 -9.69 7.11 99.48 0.71 -8.99 15 7 C -0.30 -15.08 9.71 84.06 0.82 -14.26 15 8 H 0.11 5.87 7.11 -2.91 -0.02 5.85 15 9 N -0.48 -22.77 5.36 -188.03 -1.01 -23.77 15 10 C 0.27 12.61 7.56 133.91 1.01 13.63 15 11 N -0.38 -19.28 10.22 -54.38 -0.56 -19.84 15 12 N -0.20 -9.45 11.39 -48.84 -0.56 -10.00 15 13 C -0.01 -0.51 7.45 85.37 0.64 0.12 15 14 Cl -0.02 -0.71 27.91 -2.72 -0.08 -0.78 15 15 C -0.02 -0.79 5.75 -21.29 -0.12 -0.91 15 16 C -0.10 -2.61 9.50 22.27 0.21 -2.40 15 17 C -0.07 -1.73 9.72 22.10 0.21 -1.51 15 18 C -0.04 -1.18 6.28 22.15 0.14 -1.04 15 19 Cl -0.06 -1.42 28.91 -2.72 -0.08 -1.49 15 20 C -0.09 -2.95 9.29 22.25 0.21 -2.74 15 21 C -0.11 -4.41 5.76 -21.20 -0.12 -4.53 15 22 H 0.29 12.88 8.31 -92.71 -0.77 12.11 15 23 H 0.41 18.78 6.18 -92.71 -0.57 18.21 15 24 H 0.17 3.57 7.17 -2.91 -0.02 3.55 15 25 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 26 H 0.13 4.52 6.63 -2.91 -0.02 4.50 15 Total: -1.00 -55.34 267.70 4.19 -51.15 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.69 Total: 20.34 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.46 Total: -13.38 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -1.84 Total: -95.18 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.15 Total: -2.28 kcal Total: -55.34 4.19 -51.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537705.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.032 kcal (2) G-P(sol) polarization free energy of solvation -55.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds