Wall clock time and date at job start Tue Mar 31 2020 05:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00304 * 2 1 4 4 H 1.48497 * 109.47436 * 240.00479 * 3 2 1 5 5 H 1.48504 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47182 * 120.00284 * 3 2 1 7 7 C 1.38885 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00375 * 179.97438 * 7 2 1 9 9 N 1.36814 * 120.00072 * 359.97438 * 7 2 1 10 10 C 1.38527 * 120.00076 * 180.02562 * 9 7 2 11 11 N 1.32054 * 119.77012 * 0.02562 * 10 9 7 12 12 C 1.33799 * 119.67730 * 180.02562 * 11 10 9 13 13 C 1.40685 * 120.96763 * 180.27390 * 12 11 10 14 14 Cl 1.73598 * 120.14980 * 359.96192 * 13 12 11 15 15 C 1.36244 * 119.69891 * 180.23257 * 13 12 11 16 16 C 1.39300 * 120.91306 * 359.45492 * 15 13 12 17 17 C 1.36181 * 120.96898 * 0.27715 * 16 15 13 18 18 C 1.40462 * 119.77986 * 359.97438 * 17 16 15 19 19 N 1.33977 * 120.94942 * 180.02562 * 18 17 16 20 20 C 1.31215 * 119.84273 * 179.97438 * 19 18 17 21 21 Cl 1.73607 * 119.71388 * 179.97438 * 20 19 18 22 22 H 0.97000 * 119.99272 * 359.97438 * 1 2 3 23 23 H 0.97001 * 119.99753 * 359.97438 * 9 7 2 24 24 H 1.08002 * 119.54529 * 179.73899 * 15 13 12 25 25 H 1.07998 * 119.51550 * 180.30317 * 16 15 13 26 26 H 1.07999 * 120.10806 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0095 -1.2028 -0.0005 8 1 3.0895 -1.2029 -0.0010 9 7 1.3255 -2.3876 -0.0005 10 6 2.0181 -3.5873 -0.0005 11 7 3.3386 -3.5820 0.0000 12 6 4.0057 -4.7419 -0.0005 13 6 5.4123 -4.7679 0.0057 14 17 6.3119 -3.2832 0.0134 15 6 6.0653 -5.9637 0.0002 16 6 5.3594 -7.1646 -0.0002 17 6 3.9977 -7.1770 -0.0008 18 6 3.2890 -5.9642 -0.0004 19 7 1.9493 -5.9491 -0.0004 20 6 1.3093 -4.8036 0.0004 21 17 -0.4267 -4.7879 -0.0003 22 1 -0.4849 0.8401 0.0004 23 1 0.3555 -2.3876 0.0002 24 1 7.1452 -5.9807 0.0008 25 1 5.9000 -8.0995 0.0004 26 1 3.4644 -8.1161 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155537862.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:40 Heat of formation + Delta-G solvation = 36.232050 kcal Electronic energy + Delta-G solvation = -16930.495243 eV Core-core repulsion = 13867.059213 eV Total energy + Delta-G solvation = -3063.436030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.01450 -39.05322 -37.71552 -37.47979 -36.74965 -35.10286 -33.81101 -31.14203 -30.33516 -27.48633 -25.43178 -24.24855 -23.02932 -20.54788 -19.91052 -18.56778 -18.40825 -16.88783 -16.52150 -16.36104 -16.10665 -15.56008 -15.42440 -15.06114 -14.19965 -13.72743 -13.69662 -12.96612 -12.94378 -12.84447 -12.83764 -12.76100 -12.36658 -12.21240 -12.11214 -11.69674 -11.63814 -11.62822 -10.69457 -9.96658 -9.40257 -8.87489 -8.77927 -5.94781 -0.67717 -0.13244 0.67718 1.02237 1.37105 1.39451 1.43610 1.50344 1.91345 2.12857 2.67800 2.84665 3.24887 3.37647 3.51564 3.88531 4.01542 4.23294 4.38021 4.77375 4.87605 5.14407 5.21389 5.32138 5.43338 5.54648 5.87266 6.34652 6.47695 6.82937 6.97084 7.47910 8.36009 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.007492 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.972039 B = 3736.301174 C = 5595.421729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C -0.007 4.007 3 Si 1.005 2.995 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.300 4.300 8 H 0.112 0.888 9 N -0.491 5.491 10 C 0.291 3.709 11 N -0.543 5.543 12 C 0.157 3.843 13 C -0.078 4.078 14 Cl -0.070 7.070 15 C -0.046 4.046 16 C -0.144 4.144 17 C -0.038 4.038 18 C -0.042 4.042 19 N -0.398 5.398 20 C 0.101 3.899 21 Cl -0.024 7.024 22 H 0.291 0.709 23 H 0.412 0.588 24 H 0.168 0.832 25 H 0.180 0.820 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -9.059 0.004 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.213 4.213 3 Si 0.826 3.174 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.433 4.433 8 H 0.129 0.871 9 N -0.096 5.096 10 C 0.037 3.963 11 N -0.274 5.274 12 C 0.022 3.978 13 C -0.108 4.108 14 Cl -0.041 7.041 15 C -0.066 4.066 16 C -0.166 4.166 17 C -0.057 4.057 18 C -0.167 4.167 19 N -0.112 5.112 20 C -0.094 4.094 21 Cl 0.004 6.996 22 H 0.101 0.899 23 H 0.250 0.750 24 H 0.185 0.815 25 H 0.197 0.803 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.298 -8.541 0.004 11.234 hybrid contribution -0.799 1.141 -0.002 1.393 sum 6.499 -7.399 0.002 9.848 Atomic orbital electron populations 1.69706 1.07418 1.31092 1.44303 1.26432 0.96581 1.03343 0.94916 0.84794 0.77831 0.75099 0.79694 1.18937 1.19171 1.18945 1.20271 0.94261 0.82367 1.46364 0.87052 1.41153 1.08817 1.02325 1.57325 1.18851 0.89618 0.85786 1.02067 1.68446 1.04364 1.26573 1.28030 1.19400 0.94226 0.89233 0.94937 1.20464 0.88750 0.88958 1.12630 1.98321 1.73225 1.35467 1.97072 1.21227 1.02029 0.89459 0.93895 1.20977 0.92779 0.98714 1.04099 1.20981 0.94703 0.95335 0.94729 1.19288 0.87866 0.95067 1.14505 1.67667 1.09114 1.26279 1.08129 1.22293 0.87603 0.90221 1.09256 1.98349 1.06316 1.98246 1.96724 0.89909 0.74963 0.81485 0.80275 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.50 13.05 21.66 0.28 -44.21 15 2 C -0.01 -0.36 5.50 84.90 0.47 0.10 15 3 Si 1.00 39.00 29.55 68.60 2.03 41.03 15 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 5 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.46 15 7 C -0.30 -15.55 9.70 84.07 0.82 -14.73 15 8 H 0.11 5.94 7.08 -2.91 -0.02 5.92 15 9 N -0.49 -24.60 5.36 -188.53 -1.01 -25.61 15 10 C 0.29 14.01 7.44 133.73 1.00 15.00 15 11 N -0.54 -26.11 8.66 -185.49 -1.61 -27.72 15 12 C 0.16 6.58 6.59 40.30 0.27 6.84 15 13 C -0.08 -2.70 6.33 22.40 0.14 -2.55 15 14 Cl -0.07 -2.42 28.52 -2.72 -0.08 -2.50 15 15 C -0.05 -1.13 9.72 22.06 0.21 -0.92 15 16 C -0.14 -3.09 9.95 22.05 0.22 -2.87 15 17 C -0.04 -1.06 9.98 22.33 0.22 -0.84 15 18 C -0.04 -1.62 6.59 40.21 0.26 -1.35 15 19 N -0.40 -16.33 10.43 -178.40 -1.86 -18.19 15 20 C 0.10 4.38 7.32 85.41 0.62 5.01 15 21 Cl -0.02 -0.91 27.73 -2.72 -0.08 -0.99 15 22 H 0.29 13.44 8.31 -92.71 -0.77 12.67 15 23 H 0.41 20.27 6.52 -92.71 -0.60 19.67 15 24 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 25 H 0.18 2.13 8.06 -2.91 -0.02 2.10 15 26 H 0.15 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -58.39 269.81 2.57 -55.82 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.66 Total: 18.69 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 4.23 Total: 3.69 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.19 Total: -115.74 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.15 Total: -3.49 kcal Total: -58.39 2.57 -55.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155537862.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.057 kcal (2) G-P(sol) polarization free energy of solvation -58.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds