Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86799 * 119.99595 * 2 1 4 4 H 1.48498 * 109.47163 * 239.99931 * 3 2 1 5 5 H 1.48496 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46955 * 120.00337 * 3 2 1 7 7 C 1.39869 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99483 * 197.51083 * 7 2 1 9 9 C 1.41193 * 119.99929 * 17.50963 * 7 2 1 10 10 C 1.40791 * 120.56159 * 203.57428 * 9 7 2 11 11 N 1.31475 * 120.38684 * 179.74774 * 10 9 7 12 12 C 1.32739 * 121.73808 * 0.24923 * 11 10 9 13 13 N 1.38412 * 119.43598 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99802 * 359.97438 * 13 12 11 15 15 H 1.09006 * 110.65412 * 323.27821 * 14 13 12 16 16 C 1.54599 * 110.73450 * 199.90520 * 14 13 12 17 17 O 1.44044 * 102.54947 * 266.81099 * 16 14 13 18 18 N 1.41459 * 107.84333 * 333.10576 * 17 16 14 19 19 C 1.34775 * 111.67446 * 18.75463 * 18 17 16 20 20 O 1.21288 * 126.24166 * 178.82037 * 19 18 17 21 21 C 1.39794 * 121.12998 * 359.97438 * 12 11 10 22 22 Cl 1.73597 * 120.26359 * 180.02562 * 21 12 11 23 23 C 1.36661 * 119.47254 * 0.02562 * 21 12 11 24 24 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.81009 * 0.02562 * 10 9 7 26 26 H 0.96998 * 120.00144 * 180.02562 * 13 12 11 27 27 H 1.09002 * 110.79457 * 25.07215 * 16 14 13 28 28 H 1.08992 * 110.79679 * 148.54751 * 16 14 13 29 29 H 0.97000 * 124.16601 * 198.74703 * 18 17 16 30 30 H 1.08000 * 120.80304 * 180.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0509 -1.2329 0.2809 9 6 1.3516 -2.4056 -0.3690 10 6 1.8322 -3.6527 0.0735 11 7 1.2150 -4.7624 -0.2676 12 6 0.1325 -4.7515 -1.0357 13 7 -0.4799 -5.9482 -1.3652 14 6 0.0676 -7.2126 -0.8673 15 1 1.1570 -7.1787 -0.8481 16 6 -0.4319 -8.3998 -1.7224 17 8 -1.6004 -8.8350 -1.0013 18 7 -1.4272 -8.4829 0.3578 19 6 -0.4844 -7.5319 0.5093 20 8 -0.1399 -7.0240 1.5555 21 6 -0.4003 -3.5519 -1.5168 22 17 -1.8174 -3.5638 -2.5194 23 6 0.2035 -2.3698 -1.1916 24 1 -0.4850 0.8400 0.0004 25 1 2.7105 -3.6980 0.7005 26 1 -1.2711 -5.9498 -1.9263 27 1 -0.6978 -8.0688 -2.7263 28 1 0.3164 -9.1913 -1.7603 29 1 -1.9257 -8.8773 1.0905 30 1 -0.1901 -1.4305 -1.5511 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156697713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = 9.009445 kcal Electronic energy + Delta-G solvation = -19617.727680 eV Core-core repulsion = 16248.235119 eV Total energy + Delta-G solvation = -3369.492561 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48553 -38.64540 -37.27384 -35.64596 -35.13777 -33.60710 -31.50680 -30.56295 -30.34688 -28.26944 -24.92957 -23.69268 -22.06641 -21.38581 -20.67480 -18.23343 -17.49997 -17.19806 -16.54653 -15.61528 -15.52391 -15.20167 -14.83051 -14.33708 -14.07860 -13.79084 -13.39731 -13.17590 -13.01490 -12.30485 -11.90797 -11.72843 -11.43096 -11.35455 -11.18683 -11.05663 -10.82772 -10.45017 -10.29074 -9.90757 -9.49456 -9.05154 -8.87451 -8.33664 -8.16614 -7.03386 -6.78675 -4.37277 2.14563 2.44383 2.56841 2.77870 3.03234 3.05153 3.12100 3.15778 3.85731 3.94093 4.10174 4.43716 4.49755 4.64030 5.05831 5.31974 5.50789 5.74880 5.87547 6.27960 6.59588 6.72494 6.86324 7.00355 7.02264 7.08908 7.54943 7.62405 7.92176 8.16080 8.22779 8.31271 8.61603 8.66565 9.46537 10.07495 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.004906 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.066570 B = 5706.024819 C = 6313.744355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.044 3.956 10 C 0.017 3.983 11 N -0.484 5.484 12 C 0.273 3.727 13 N -0.719 5.719 14 C 0.121 3.879 15 H 0.127 0.873 16 C 0.020 3.980 17 O -0.147 6.147 18 N -0.599 5.599 19 C 0.499 3.501 20 O -0.482 6.482 21 C -0.092 4.092 22 Cl -0.114 7.114 23 C -0.095 4.095 24 H 0.284 0.716 25 H 0.136 0.864 26 H 0.403 0.597 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.433 0.567 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 -10.283 -4.698 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.039 3.961 10 C -0.143 4.143 11 N -0.199 5.199 12 C 0.041 3.959 13 N -0.362 5.362 14 C 0.009 3.991 15 H 0.145 0.855 16 C -0.058 4.058 17 O -0.155 6.155 18 N -0.308 5.308 19 C 0.282 3.718 20 O -0.352 6.352 21 C -0.124 4.124 22 Cl -0.086 7.086 23 C -0.121 4.121 24 H 0.095 0.905 25 H 0.153 0.847 26 H 0.241 0.759 27 H 0.138 0.862 28 H 0.110 0.890 29 H 0.281 0.719 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.637 -10.754 -3.961 11.576 hybrid contribution -0.721 1.420 -0.313 1.623 sum -2.357 -9.334 -4.275 10.533 Atomic orbital electron populations 1.69789 1.07612 1.29771 1.34760 1.25934 0.94775 1.01557 0.92229 0.86284 0.80064 0.79895 0.80071 1.18736 1.20313 1.18871 1.19348 0.98120 0.90690 1.39773 0.89774 1.18338 0.92357 0.93913 0.91534 1.22351 1.01744 0.86981 1.03248 1.66711 1.07460 1.32562 1.13122 1.17276 0.94212 0.83572 1.00860 1.43441 1.33508 1.00712 1.58510 1.21792 1.01928 0.85410 0.89962 0.85508 1.24254 0.88589 0.96110 0.96827 1.90867 1.38633 1.81280 1.04749 1.47908 1.43082 1.42153 0.97613 1.21946 0.79414 0.77758 0.92727 1.90838 1.60835 1.51468 1.32082 1.20870 0.92710 0.94965 1.03837 1.98245 1.41986 1.98697 1.69697 1.21282 0.97462 0.95629 0.97774 0.90477 0.84663 0.75927 0.86213 0.88975 0.71895 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 10.92 55.54 0.61 -19.24 16 2 C 0.07 1.75 5.17 -17.34 -0.09 1.66 16 3 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.23 9.06 -37.85 -0.34 -11.57 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.04 1.12 5.59 -106.65 -0.60 0.53 16 10 C 0.02 0.40 10.97 -16.74 -0.18 0.22 16 11 N -0.48 -11.34 9.21 -11.75 -0.11 -11.45 16 12 C 0.27 6.01 7.48 -155.06 -1.16 4.85 16 13 N -0.72 -12.71 5.24 -53.64 -0.28 -12.99 16 14 C 0.12 1.83 3.37 -67.74 -0.23 1.60 16 15 H 0.13 1.99 7.64 -51.93 -0.40 1.60 16 16 C 0.02 0.20 7.74 38.00 0.29 0.50 16 17 O -0.15 -1.75 12.49 -11.40 -0.14 -1.89 16 18 N -0.60 -7.80 7.31 31.49 0.23 -7.57 16 19 C 0.50 8.43 8.32 -10.48 -0.09 8.35 16 20 O -0.48 -10.31 18.03 5.55 0.10 -10.21 16 21 C -0.09 -2.09 6.32 -39.57 -0.25 -2.34 16 22 Cl -0.11 -2.18 27.56 -51.86 -1.43 -3.61 16 23 C -0.09 -2.36 8.52 -38.99 -0.33 -2.69 16 24 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 25 H 0.14 3.03 8.06 -52.48 -0.42 2.60 16 26 H 0.40 6.53 7.18 -40.82 -0.29 6.23 16 27 H 0.12 1.02 8.04 -51.93 -0.42 0.60 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.43 4.58 8.96 -40.82 -0.37 4.21 16 30 H 0.14 3.60 6.19 -52.49 -0.33 3.28 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -29.59 284.64 -6.93 -36.52 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -2.19 Total: 12.15 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -2.98 Total: 1.10 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.45 Total: -51.24 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.04 Total: -12.10 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.43 Total: -3.61 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.59 -6.93 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156697713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.528 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds