Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86799 * 119.99595 * 2 1 4 4 H 1.48498 * 109.47163 * 239.99931 * 3 2 1 5 5 H 1.48496 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46955 * 120.00337 * 3 2 1 7 7 C 1.39869 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99483 * 197.51083 * 7 2 1 9 9 C 1.41193 * 119.99929 * 17.50963 * 7 2 1 10 10 C 1.40791 * 120.56159 * 203.57428 * 9 7 2 11 11 N 1.31475 * 120.38684 * 179.74774 * 10 9 7 12 12 C 1.32739 * 121.73808 * 0.24923 * 11 10 9 13 13 N 1.38412 * 119.43598 * 180.02562 * 12 11 10 14 14 C 1.46502 * 119.99802 * 359.97438 * 13 12 11 15 15 H 1.09006 * 110.65412 * 323.27821 * 14 13 12 16 16 C 1.54599 * 110.73450 * 199.90520 * 14 13 12 17 17 O 1.44044 * 102.54947 * 266.81099 * 16 14 13 18 18 N 1.41459 * 107.84333 * 333.10576 * 17 16 14 19 19 C 1.34775 * 111.67446 * 18.75463 * 18 17 16 20 20 O 1.21288 * 126.24166 * 178.82037 * 19 18 17 21 21 C 1.39794 * 121.12998 * 359.97438 * 12 11 10 22 22 Cl 1.73597 * 120.26359 * 180.02562 * 21 12 11 23 23 C 1.36661 * 119.47254 * 0.02562 * 21 12 11 24 24 H 0.96995 * 120.00441 * 359.97438 * 1 2 3 25 25 H 1.08005 * 119.81009 * 0.02562 * 10 9 7 26 26 H 0.96998 * 120.00144 * 180.02562 * 13 12 11 27 27 H 1.09002 * 110.79457 * 25.07215 * 16 14 13 28 28 H 1.08992 * 110.79679 * 148.54751 * 16 14 13 29 29 H 0.97000 * 124.16601 * 198.74703 * 18 17 16 30 30 H 1.08000 * 120.80304 * 180.02562 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0509 -1.2329 0.2809 9 6 1.3516 -2.4056 -0.3690 10 6 1.8322 -3.6527 0.0735 11 7 1.2150 -4.7624 -0.2676 12 6 0.1325 -4.7515 -1.0357 13 7 -0.4799 -5.9482 -1.3652 14 6 0.0676 -7.2126 -0.8673 15 1 1.1570 -7.1787 -0.8481 16 6 -0.4319 -8.3998 -1.7224 17 8 -1.6004 -8.8350 -1.0013 18 7 -1.4272 -8.4829 0.3578 19 6 -0.4844 -7.5319 0.5093 20 8 -0.1399 -7.0240 1.5555 21 6 -0.4003 -3.5519 -1.5168 22 17 -1.8174 -3.5638 -2.5194 23 6 0.2035 -2.3698 -1.1916 24 1 -0.4850 0.8400 0.0004 25 1 2.7105 -3.6980 0.7005 26 1 -1.2711 -5.9498 -1.9263 27 1 -0.6978 -8.0688 -2.7263 28 1 0.3164 -9.1913 -1.7603 29 1 -1.9257 -8.8773 1.0905 30 1 -0.1901 -1.4305 -1.5511 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156697713.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = -12.218679 kcal Electronic energy + Delta-G solvation = -19618.648201 eV Core-core repulsion = 16248.235119 eV Total energy + Delta-G solvation = -3370.413081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.70596 -40.38488 -38.56859 -37.32844 -36.72757 -35.27964 -32.64034 -32.39188 -31.87291 -29.80075 -26.67572 -24.89662 -23.67205 -23.12939 -22.02244 -19.48717 -19.28462 -18.65631 -18.01360 -17.20922 -16.80750 -16.41813 -16.39224 -15.98567 -15.49235 -15.10204 -14.83075 -14.82141 -14.47997 -13.99050 -13.63822 -13.25616 -12.99403 -12.88702 -12.68987 -12.48613 -12.32267 -12.03286 -11.78328 -11.64215 -11.16363 -10.52957 -10.18376 -10.11577 -9.97311 -8.78793 -8.53070 -6.23523 0.62792 0.96010 1.11785 1.23353 1.37843 1.42967 1.53359 1.57204 2.22707 2.53453 2.70187 3.01702 3.35207 3.50227 3.66765 4.06319 4.29157 4.42165 4.57002 4.70118 4.75248 5.05635 5.19497 5.27155 5.64580 5.75811 5.76685 5.92713 6.21487 6.48466 6.62013 6.77723 6.83793 6.98911 7.67193 8.31366 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.004906 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.066570 B = 5706.024819 C = 6313.744355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.480 4.480 8 H 0.088 0.912 9 C 0.017 3.983 10 C 0.004 3.996 11 N -0.493 5.493 12 C 0.279 3.721 13 N -0.709 5.709 14 C 0.112 3.888 15 H 0.121 0.879 16 C 0.032 3.968 17 O -0.143 6.143 18 N -0.581 5.581 19 C 0.491 3.509 20 O -0.538 6.538 21 C -0.104 4.104 22 Cl -0.082 7.082 23 C -0.109 4.109 24 H 0.290 0.710 25 H 0.144 0.856 26 H 0.412 0.588 27 H 0.147 0.853 28 H 0.128 0.872 29 H 0.445 0.555 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -11.399 -5.953 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.510 4.510 8 H 0.106 0.894 9 C 0.011 3.989 10 C -0.155 4.155 11 N -0.208 5.208 12 C 0.046 3.954 13 N -0.352 5.352 14 C 0.001 3.999 15 H 0.138 0.862 16 C -0.044 4.044 17 O -0.151 6.151 18 N -0.288 5.288 19 C 0.274 3.726 20 O -0.413 6.413 21 C -0.136 4.136 22 Cl -0.054 7.054 23 C -0.136 4.136 24 H 0.100 0.900 25 H 0.162 0.838 26 H 0.251 0.749 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.295 0.705 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.092 -11.946 -5.243 13.212 hybrid contribution -0.719 1.565 -0.006 1.722 sum -2.811 -10.381 -5.249 11.967 Atomic orbital electron populations 1.69849 1.09060 1.30899 1.35676 1.26760 0.95433 1.04624 0.91191 0.85199 0.78669 0.75424 0.80165 1.18249 1.19617 1.18351 1.19619 0.98564 0.91558 1.41279 0.89394 1.18619 0.93192 0.94673 0.92404 1.22539 1.02281 0.87067 1.03580 1.66777 1.08177 1.32181 1.13691 1.17583 0.93517 0.85024 0.99323 1.43471 1.33350 1.00420 1.58008 1.22024 1.01736 0.85846 0.90291 0.86174 1.24509 0.88678 0.94649 0.96612 1.90896 1.39488 1.81084 1.03607 1.47716 1.41550 1.40667 0.98869 1.22157 0.79881 0.77967 0.92569 1.90809 1.62817 1.53700 1.33947 1.20948 0.93755 0.94677 1.04254 1.98240 1.39916 1.98660 1.68567 1.21238 0.97983 0.95928 0.98447 0.89953 0.83838 0.74942 0.83582 0.85374 0.70458 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.29 10.92 21.82 0.24 -42.05 16 2 C 0.03 1.69 5.17 85.23 0.44 2.13 16 3 Si 0.98 36.86 29.59 68.60 2.03 38.89 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 7 C -0.48 -24.67 9.06 23.39 0.21 -24.46 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.02 0.88 5.59 -21.18 -0.12 0.76 16 10 C 0.00 0.21 10.97 85.37 0.94 1.15 16 11 N -0.49 -23.34 9.21 -191.08 -1.76 -25.10 16 12 C 0.28 12.23 7.48 133.32 1.00 13.22 16 13 N -0.71 -23.90 5.24 -323.63 -1.70 -25.59 16 14 C 0.11 3.16 3.37 45.11 0.15 3.32 16 15 H 0.12 3.61 7.64 -2.38 -0.02 3.59 16 16 C 0.03 0.53 7.74 72.53 0.56 1.09 16 17 O -0.14 -2.84 12.49 -38.47 -0.48 -3.32 16 18 N -0.58 -13.79 7.31 -172.68 -1.26 -15.06 16 19 C 0.49 16.05 8.32 87.98 0.73 16.78 16 20 O -0.54 -23.24 18.03 -3.05 -0.06 -23.29 16 21 C -0.10 -4.72 6.32 22.28 0.14 -4.58 16 22 Cl -0.08 -3.04 27.56 -2.72 -0.07 -3.11 16 23 C -0.11 -5.55 8.52 22.65 0.19 -5.36 16 24 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 25 H 0.14 6.64 8.06 -2.91 -0.02 6.62 16 26 H 0.41 12.28 7.18 -92.71 -0.67 11.62 16 27 H 0.15 1.74 8.04 -2.39 -0.02 1.72 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.45 8.51 8.96 -92.71 -0.83 7.68 16 30 H 0.13 6.72 6.19 -2.91 -0.02 6.70 16 Total: -1.00 -65.77 284.64 0.92 -64.85 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.27 Total: 29.74 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 4.25 Total: 4.04 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.48 Total: -107.80 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.54 Total: -26.61 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.07 Total: -3.11 kcal Total: -65.77 0.92 -64.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156697713.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.630 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds