Wall clock time and date at job start Tue Mar 31 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47101 * 269.99677 * 3 2 1 5 5 H 1.48494 * 109.46982 * 30.00008 * 3 2 1 6 6 H 1.48505 * 109.46845 * 149.99690 * 3 2 1 7 7 C 1.38800 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00312 * 0.02562 * 7 2 1 9 9 S 1.76205 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.80993 * 100.00051 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46983 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00183 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99755 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99531 * 180.02562 * 13 11 10 15 15 C 1.53781 * 113.61225 * 155.00207 * 14 13 11 16 16 C 1.53786 * 87.17350 * 139.93836 * 15 14 13 17 17 Cl 1.80296 * 113.61508 * 89.15772 * 16 15 14 18 18 Cl 1.80306 * 113.61156 * 220.06247 * 16 15 14 19 19 C 1.53782 * 113.61191 * 252.49880 * 14 13 11 20 20 H 0.97001 * 119.99908 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47645 * 59.99581 * 10 9 7 22 22 H 1.09007 * 109.46986 * 299.99528 * 10 9 7 23 23 H 0.96997 * 119.99692 * 0.02562 * 13 11 10 24 24 H 1.08996 * 112.85385 * 23.80181 * 14 13 11 25 25 H 1.09002 * 113.61445 * 254.52836 * 15 14 13 26 26 H 1.09002 * 113.61408 * 25.34566 * 15 14 13 27 27 H 1.08997 * 113.61668 * 334.56642 * 19 14 13 28 28 H 1.08998 * 113.61674 * 105.39151 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0035 13 7 6.0456 -4.4948 0.0026 14 6 7.4907 -4.7358 0.0043 15 6 7.8874 -6.0968 0.6002 16 6 8.9331 -6.1980 -0.5229 17 17 10.5282 -5.4766 -0.0917 18 17 9.0780 -7.8512 -1.2279 19 6 8.0301 -5.2551 -1.3389 20 1 -0.4850 0.8401 -0.0004 21 1 3.6439 -3.4315 -0.8892 22 1 3.6433 -3.4318 0.8908 23 1 5.4290 -5.2435 0.0019 24 1 8.0589 -3.8990 0.4104 25 1 8.3227 -6.0268 1.5971 26 1 7.1010 -6.8486 0.5336 27 1 7.2832 -5.7772 -1.9369 28 1 8.5794 -4.5052 -1.9081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156835975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:06 Heat of formation + Delta-G solvation = -37.498675 kcal Electronic energy + Delta-G solvation = -15162.625970 eV Core-core repulsion = 12199.143936 eV Total energy + Delta-G solvation = -2963.482034 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 282.994 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25565 -38.44305 -36.30847 -36.22972 -33.30566 -32.47311 -29.44934 -26.54358 -25.68245 -24.60633 -20.76514 -20.29425 -17.92660 -17.32005 -16.60954 -16.11429 -15.30840 -15.04331 -14.59100 -14.24635 -13.97939 -13.41589 -13.30840 -13.05557 -12.82562 -12.39855 -11.85525 -11.68582 -11.47725 -11.30603 -11.19767 -11.04453 -11.03873 -10.66979 -10.63952 -9.89719 -9.66222 -9.20788 -9.03414 -8.55512 -6.96789 -6.32359 -4.04837 0.90716 1.72158 2.68079 2.77370 3.22176 3.30737 3.43600 3.47452 3.53877 3.62973 4.15197 4.29731 4.63519 4.69860 4.92148 5.01359 5.06717 5.16136 5.19910 5.38979 5.66799 5.69251 5.93794 6.31685 7.42046 7.90510 8.32589 8.37975 9.13623 10.76744 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.003228 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.756304 B = 8670.748035 C = 9072.689401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.724 5.724 14 C 0.133 3.867 15 C -0.138 4.138 16 C 0.065 3.935 17 Cl -0.109 7.109 18 Cl -0.132 7.132 19 C -0.144 4.144 20 H 0.271 0.729 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.403 0.597 24 H 0.129 0.871 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.066 -15.720 -0.439 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.378 5.378 14 C 0.026 3.974 15 C -0.176 4.176 16 C 0.013 3.987 17 Cl -0.082 7.082 18 Cl -0.105 7.105 19 C -0.183 4.183 20 H 0.081 0.919 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.238 0.762 24 H 0.147 0.853 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.298 -14.099 -0.448 23.104 hybrid contribution -0.908 -0.885 -0.106 1.272 sum 17.390 -14.985 -0.554 22.962 Atomic orbital electron populations 1.69936 1.05909 1.27805 1.47905 1.24718 0.94463 0.98986 0.93154 0.86735 0.81880 0.83284 0.79947 1.19199 1.19905 1.15931 1.22303 0.88179 0.97553 1.58961 0.89347 1.84817 1.09411 0.99770 1.97441 1.23287 0.93624 1.04666 1.05990 1.20386 0.90760 0.82174 0.74692 1.90714 1.58725 1.42101 1.47169 1.45840 1.06029 1.08468 1.77458 1.22231 0.83319 0.97089 0.94779 1.24109 0.96547 0.98570 0.98416 1.27852 0.86291 0.84776 0.99781 1.98779 1.32650 1.83247 1.93558 1.98769 1.98172 1.27707 1.85857 1.24307 0.97572 0.97599 0.98867 0.91906 0.88318 0.88269 0.76183 0.85291 0.88028 0.86614 0.86727 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.12 13.97 55.49 0.78 -25.35 15 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 15 3 Si 0.86 21.42 27.74 -169.99 -4.72 16.70 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 15 5 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.24 -5.86 6.74 56.52 0.38 -5.48 15 7 C -0.52 -14.69 10.04 30.94 0.31 -14.38 15 8 H 0.09 2.59 8.03 -52.49 -0.42 2.17 15 9 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 15 10 C -0.13 -2.25 6.16 36.01 0.22 -2.03 15 11 C 0.53 8.56 7.85 -10.98 -0.09 8.48 15 12 O -0.51 -10.27 15.46 5.56 0.09 -10.18 15 13 N -0.72 -7.72 5.35 -53.02 -0.28 -8.01 15 14 C 0.13 1.24 4.05 -67.12 -0.27 0.97 15 15 C -0.14 -0.93 7.16 -25.92 -0.19 -1.12 15 16 C 0.06 0.51 2.08 -25.82 -0.05 0.46 15 17 Cl -0.11 -0.99 28.64 -51.86 -1.49 -2.48 15 18 Cl -0.13 -1.09 28.84 -51.86 -1.50 -2.59 15 19 C -0.14 -1.19 7.22 -25.82 -0.19 -1.37 15 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 21 H 0.10 1.63 8.14 -51.92 -0.42 1.21 15 22 H 0.10 1.64 8.14 -51.91 -0.42 1.22 15 23 H 0.40 3.07 8.73 -40.82 -0.36 2.72 15 24 H 0.13 1.46 7.46 -51.93 -0.39 1.08 15 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.12 0.60 8.11 -51.93 -0.42 0.18 15 27 H 0.11 0.84 8.14 -51.93 -0.42 0.41 15 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -32.44 290.90 -7.93 -40.37 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.86 Total: -1.07 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.35 Total: -6.34 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.49 Total: -33.36 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.70 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -2.98 Total: -5.07 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.44 -7.93 -40.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156835975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.871 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds