Wall clock time and date at job start Tue Mar 31 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.43196 * 119.99661 * 285.61744 * 3 2 1 5 5 N 3.51034 * 140.68615 * 285.62041 * 2 1 3 6 6 C 1.41131 * 119.99731 * 105.62321 * 3 2 1 7 7 C 1.38944 * 120.00241 * 353.73699 * 6 3 2 8 8 H 1.07998 * 119.99973 * 332.02396 * 7 6 3 9 9 C 1.40863 * 119.99814 * 152.02383 * 7 6 3 10 10 N 1.30321 * 120.00004 * 351.94935 * 9 7 6 11 11 Si 1.86803 * 119.99878 * 171.95945 * 9 7 6 12 12 H 1.48497 * 109.47441 * 59.99530 * 11 9 7 13 13 H 1.48500 * 109.46794 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.46860 * 299.99407 * 11 9 7 15 15 N 1.38437 * 119.99689 * 173.74528 * 6 3 2 16 16 C 1.38591 * 120.00516 * 122.82777 * 15 6 3 17 17 N 1.32376 * 119.80972 * 359.84762 * 16 15 6 18 18 C 1.31931 * 121.86610 * 179.74935 * 17 16 15 19 19 C 1.38176 * 121.26105 * 0.52967 * 18 17 16 20 20 C 1.38747 * 119.46566 * 359.74045 * 19 18 17 21 21 F 1.35102 * 120.85304 * 179.97438 * 20 19 18 22 22 C 1.40282 * 118.29185 * 0.02562 * 20 19 18 23 23 C 1.43195 * 120.63070 * 179.97438 * 22 20 19 24 24 N 6.98351 * 167.49079 * 167.05160 * 2 1 3 25 25 H 0.97001 * 119.99804 * 185.04320 * 10 9 7 26 26 H 0.97005 * 119.99204 * 302.55229 * 15 6 3 27 27 H 1.08001 * 119.37028 * 180.29627 * 18 17 16 28 28 H 1.08002 * 120.26771 * 179.72268 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2841 -0.3329 1.1944 5 7 3.8520 -0.5989 2.1419 6 6 3.2735 0.3301 -1.1771 7 6 2.5849 0.5265 -2.3678 8 1 1.6458 0.0211 -2.5382 9 6 3.1117 1.3848 -3.3528 10 7 4.1589 2.1142 -3.0889 11 14 2.3091 1.4775 -5.0370 12 1 0.8999 1.9222 -4.8901 13 1 3.0480 2.4474 -5.8846 14 1 2.3412 0.1369 -5.6751 15 7 4.6516 0.4575 -1.1454 16 6 5.4388 -0.3181 -1.9817 17 7 4.8690 -1.1818 -2.8074 18 6 5.5787 -1.9366 -3.6242 19 6 6.9586 -1.8673 -3.6476 20 6 7.6120 -0.9839 -2.8004 21 9 8.9600 -0.8935 -2.7997 22 6 6.8370 -0.1877 -1.9440 23 6 7.4594 0.7405 -1.0487 24 7 7.9538 1.4741 -0.3389 25 1 4.4778 2.7584 -3.7402 26 1 5.0661 1.0926 -0.5405 27 1 5.0717 -2.6245 -4.2846 28 1 7.5239 -2.4959 -4.3196 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213346.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:55 Heat of formation + Delta-G solvation = 81.684728 kcal Electronic energy + Delta-G solvation = -20586.759470 eV Core-core repulsion = 17131.683641 eV Total energy + Delta-G solvation = -3455.075828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.11825 -40.23771 -37.37906 -36.36787 -35.33246 -34.77787 -33.83207 -31.97415 -31.47118 -29.08499 -27.21264 -24.52223 -23.39510 -21.38441 -19.29928 -19.03117 -18.11735 -17.64026 -16.85960 -16.33334 -15.92334 -15.80725 -15.00487 -14.50603 -14.18292 -13.92069 -13.65334 -13.17516 -12.96811 -12.85858 -12.69193 -12.63458 -12.35739 -11.84169 -11.82377 -11.70131 -11.66970 -11.57085 -11.13436 -10.99046 -10.88179 -10.28053 -10.09584 -9.42770 -9.38323 -8.42976 -7.89049 -7.25982 -5.48874 0.76872 1.32004 2.13152 2.67163 2.71321 2.82139 2.83488 3.22368 3.32944 3.37000 3.79915 3.99914 4.00670 4.01594 4.05138 4.19396 4.26070 4.68728 5.04927 5.08117 5.13157 5.50239 5.54514 5.73747 5.89101 6.16501 6.26196 6.48261 6.94742 7.11761 7.37227 7.63388 7.68083 7.78291 8.06189 8.42175 8.88180 9.07527 9.14686 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.012884 B = 0.008214 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.684133 B = 3408.080038 C = 4597.218687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.327 3.673 3 C -0.303 4.303 4 C 0.304 3.696 5 N -0.529 5.529 6 C 0.376 3.624 7 C -0.344 4.344 8 H 0.115 0.885 9 C 0.076 3.924 10 N -0.737 5.737 11 Si 0.928 3.072 12 H -0.253 1.253 13 H -0.271 1.271 14 H -0.247 1.247 15 N -0.617 5.617 16 C 0.507 3.493 17 N -0.512 5.512 18 C 0.209 3.791 19 C -0.286 4.286 20 C 0.227 3.773 21 F -0.123 7.123 22 C -0.197 4.197 23 C 0.267 3.733 24 N -0.420 5.420 25 H 0.304 0.696 26 H 0.411 0.589 27 H 0.171 0.829 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -3.569 -11.486 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C 0.019 3.981 3 C -0.321 4.321 4 C -0.003 4.003 5 N -0.211 5.211 6 C 0.273 3.727 7 C -0.371 4.371 8 H 0.133 0.867 9 C -0.155 4.155 10 N -0.356 5.356 11 Si 0.749 3.251 12 H -0.177 1.177 13 H -0.195 1.195 14 H -0.171 1.171 15 N -0.236 5.236 16 C 0.266 3.734 17 N -0.228 5.228 18 C 0.045 3.955 19 C -0.310 4.310 20 C 0.197 3.803 21 F -0.102 7.102 22 C -0.210 4.210 23 C -0.048 4.048 24 N -0.096 5.096 25 H 0.116 0.884 26 H 0.249 0.751 27 H 0.188 0.812 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.047 -2.717 -8.938 10.618 hybrid contribution 1.266 0.440 -1.169 1.779 sum 6.313 -2.277 -10.107 12.132 Atomic orbital electron populations 1.81067 1.12125 1.18304 1.09568 1.24566 0.91163 0.90441 0.91957 1.12818 0.83206 1.45920 0.90141 1.25280 0.92617 0.90557 0.91894 1.81101 1.09701 1.18786 1.11543 1.16685 0.79220 0.85722 0.91061 1.20116 1.04687 1.15870 0.96456 0.86718 1.26537 0.93460 0.93494 1.01978 1.69418 1.16547 1.12394 1.37235 0.85944 0.80585 0.80498 0.78071 1.17699 1.19532 1.17059 1.41692 1.05285 1.38535 1.38054 1.17689 0.84082 0.85989 0.85622 1.67614 1.38682 1.08483 1.08050 1.22657 0.89485 0.91802 0.91524 1.21703 0.96700 1.06060 1.06515 1.17563 0.76436 0.93195 0.93081 1.91539 1.28836 1.94745 1.95040 1.16133 0.92287 1.06239 1.06336 1.24918 0.94014 0.92888 0.93002 1.81130 1.07327 1.10693 1.10455 0.88404 0.75086 0.81226 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.23 18.54 41.84 0.78 -11.45 15 2 C 0.33 7.27 14.07 -22.47 -0.32 6.95 15 3 C -0.30 -6.43 5.88 -104.95 -0.62 -7.05 15 4 C 0.30 6.78 14.83 -22.47 -0.33 6.45 15 5 N -0.53 -12.41 18.54 41.85 0.78 -11.63 15 6 C 0.38 7.48 5.48 -83.52 -0.46 7.02 15 7 C -0.34 -6.61 7.32 -38.33 -0.28 -6.89 15 8 H 0.12 2.22 7.32 -52.49 -0.38 1.84 15 9 C 0.08 1.34 4.93 -17.20 -0.08 1.26 15 10 N -0.74 -13.34 11.44 55.60 0.64 -12.71 15 11 Si 0.93 13.89 29.58 -169.99 -5.03 8.86 15 12 H -0.25 -3.95 7.11 56.52 0.40 -3.55 15 13 H -0.27 -3.99 7.11 56.52 0.40 -3.59 15 14 H -0.25 -3.61 7.11 56.52 0.40 -3.21 15 15 N -0.62 -11.54 3.29 -9.54 -0.03 -11.57 15 16 C 0.51 8.62 6.29 -154.93 -0.97 7.65 15 17 N -0.51 -8.04 8.55 -12.17 -0.10 -8.14 15 18 C 0.21 2.41 11.16 -17.53 -0.20 2.21 15 19 C -0.29 -3.06 10.08 -39.42 -0.40 -3.46 15 20 C 0.23 3.06 7.36 -38.63 -0.28 2.77 15 21 F -0.12 -1.67 16.91 2.25 0.04 -1.63 15 22 C -0.20 -3.14 5.78 -106.36 -0.61 -3.75 15 23 C 0.27 4.68 13.82 -22.53 -0.31 4.37 15 24 N -0.42 -7.94 18.53 41.77 0.77 -7.17 15 25 H 0.30 5.07 8.29 -40.82 -0.34 4.74 15 26 H 0.41 7.80 7.66 -40.82 -0.31 7.49 15 27 H 0.17 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.15 1.11 8.06 -52.49 -0.42 0.69 15 LS Contribution 293.07 15.07 4.42 4.42 Total: -1.00 -24.94 293.07 -3.29 -28.23 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -0.68 Total: 5.29 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: -4.87 Total: 17.52 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: 2.83 Total: -62.68 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 13.89 SS G_CDS: -5.03 Total: 8.86 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -24.94 -3.29 -28.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213346.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.912 kcal (2) G-P(sol) polarization free energy of solvation -24.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds