Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00472 * 303.91739 * 3 2 1 5 5 N 3.51041 * 140.68780 * 303.91893 * 2 1 3 6 6 C 1.41150 * 120.00158 * 123.91904 * 3 2 1 7 7 C 1.38987 * 119.99563 * 353.74409 * 6 3 2 8 8 H 1.07993 * 120.00174 * 332.23685 * 7 6 3 9 9 C 1.40844 * 119.99574 * 152.24001 * 7 6 3 10 10 N 1.30329 * 120.00655 * 351.92868 * 9 7 6 11 11 Si 1.86810 * 119.99786 * 171.92378 * 9 7 6 12 12 H 1.48498 * 109.46726 * 59.99949 * 11 9 7 13 13 H 1.48493 * 109.47158 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46954 * 300.00301 * 11 9 7 15 15 N 1.38353 * 120.00514 * 173.74532 * 6 3 2 16 16 C 1.39285 * 119.99831 * 123.05239 * 15 6 3 17 17 N 1.32299 * 119.65688 * 359.56619 * 16 15 6 18 18 C 1.31964 * 122.00761 * 179.75154 * 17 16 15 19 19 C 1.37843 * 121.07152 * 0.52554 * 18 17 16 20 20 C 1.40163 * 119.18041 * 359.74274 * 19 18 17 21 21 C 1.43205 * 120.90721 * 180.02562 * 20 19 18 22 22 N 9.48938 * 162.09893 * 92.64881 * 2 1 3 23 23 C 1.39264 * 119.65226 * 179.83739 * 16 15 6 24 24 F 1.35099 * 120.57003 * 359.95830 * 23 16 15 25 25 H 0.96995 * 120.00389 * 185.04351 * 10 9 7 26 26 H 0.96998 * 119.99790 * 302.78069 * 15 6 3 27 27 H 1.08001 * 119.46257 * 180.27575 * 18 17 16 28 28 H 1.08005 * 120.40899 * 179.72673 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.6910 1.0291 5 7 3.8520 -1.2410 1.8455 6 6 3.2734 0.6831 -1.0144 7 6 2.5844 1.2436 -2.0834 8 1 1.6436 0.8194 -2.4014 9 6 3.1133 2.3647 -2.7519 10 7 4.1630 2.9726 -2.2752 11 14 2.3104 2.9805 -4.3222 12 1 0.9026 3.3609 -4.0420 13 1 3.0517 4.1644 -4.8259 14 1 2.3381 1.9057 -5.3467 15 7 4.6507 0.7940 -0.9446 16 6 5.4413 0.3220 -1.9897 17 7 4.8685 -0.2390 -3.0420 18 6 5.5721 -0.6975 -4.0599 19 6 6.9483 -0.6203 -4.0657 20 6 7.6048 -0.0394 -2.9720 21 6 9.0330 0.0604 -2.9395 22 7 10.1660 0.1348 -2.9137 23 6 6.8268 0.4405 -1.9134 24 9 7.4094 1.0096 -0.8355 25 1 4.4836 3.7869 -2.6934 26 1 5.0656 1.2041 -0.1696 27 1 5.0615 -1.1440 -4.9004 28 1 7.5138 -1.0029 -4.9025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = 85.456359 kcal Electronic energy + Delta-G solvation = -20528.033990 eV Core-core repulsion = 17073.121712 eV Total energy + Delta-G solvation = -3454.912278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.78435 -40.10267 -37.58451 -36.58362 -35.28834 -34.74575 -33.77438 -32.28724 -31.27446 -28.74891 -27.17460 -24.88354 -23.13537 -21.69708 -19.74848 -18.55208 -17.86031 -17.26226 -17.06751 -16.29147 -15.99560 -15.70697 -15.09241 -14.48383 -13.91591 -13.78539 -13.62030 -13.30239 -13.18016 -12.93370 -12.82190 -12.60710 -12.32581 -12.03249 -11.81033 -11.69723 -11.67166 -11.54585 -11.11073 -10.95945 -10.86368 -10.26835 -10.07773 -9.48761 -9.39672 -8.31913 -7.82352 -7.10507 -5.44823 0.62469 1.24052 2.15193 2.47720 2.69313 2.72739 2.84606 3.04870 3.36913 3.39754 3.72923 3.83311 3.96935 4.02893 4.13501 4.22945 4.29863 4.73485 4.78863 5.13857 5.21853 5.54435 5.58661 5.79568 5.87272 6.20647 6.27982 6.47006 7.00630 7.17937 7.29781 7.46354 7.69636 7.83015 8.13099 8.47261 8.91764 9.10811 9.19088 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.007525 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.829938 B = 3719.947263 C = 4958.674171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.327 3.673 3 C -0.305 4.305 4 C 0.306 3.694 5 N -0.532 5.532 6 C 0.385 3.615 7 C -0.350 4.350 8 H 0.113 0.887 9 C 0.078 3.922 10 N -0.737 5.737 11 Si 0.925 3.075 12 H -0.254 1.254 13 H -0.271 1.271 14 H -0.248 1.248 15 N -0.627 5.627 16 C 0.428 3.572 17 N -0.474 5.474 18 C 0.147 3.853 19 C -0.183 4.183 20 C 0.019 3.981 21 C 0.263 3.737 22 N -0.405 5.405 23 C 0.023 3.977 24 F -0.125 7.125 25 H 0.302 0.698 26 H 0.414 0.586 27 H 0.169 0.831 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.119 1.122 -9.931 11.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C 0.019 3.981 3 C -0.323 4.323 4 C -0.001 4.001 5 N -0.215 5.215 6 C 0.282 3.718 7 C -0.378 4.378 8 H 0.130 0.870 9 C -0.152 4.152 10 N -0.357 5.357 11 Si 0.747 3.253 12 H -0.177 1.177 13 H -0.196 1.196 14 H -0.171 1.171 15 N -0.249 5.249 16 C 0.189 3.811 17 N -0.190 5.190 18 C -0.012 4.012 19 C -0.208 4.208 20 C 0.007 3.993 21 C -0.053 4.053 22 N -0.080 5.080 23 C -0.008 4.008 24 F -0.104 7.104 25 H 0.114 0.886 26 H 0.252 0.748 27 H 0.187 0.813 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.172 0.502 -8.617 10.063 hybrid contribution 0.831 1.045 -0.442 1.406 sum 6.004 1.547 -9.059 10.977 Atomic orbital electron populations 1.81061 1.12190 1.15809 1.12249 1.24604 0.91218 0.90820 0.91484 1.12864 0.83133 1.30569 1.05740 1.25275 0.92528 0.90836 0.91445 1.81098 1.09834 1.16759 1.13772 1.16628 0.79398 0.85778 0.90045 1.20104 1.04598 1.05782 1.07318 0.86966 1.26492 0.93429 0.96236 0.99070 1.69427 1.16572 1.13439 1.36225 0.85988 0.80610 0.79244 0.79505 1.17740 1.19584 1.17149 1.41566 1.04866 1.60150 1.18342 1.17943 0.84658 0.90053 0.88469 1.67442 1.38904 1.12477 1.00149 1.22520 0.89890 0.93410 0.95376 1.21727 0.95887 1.04890 0.98335 1.15955 0.84740 1.02802 0.95787 1.25239 0.92224 0.93971 0.93887 1.81199 1.11770 1.07840 1.07230 1.17889 0.90172 1.05793 0.86911 1.91495 1.84151 1.82515 1.52249 0.88579 0.74765 0.81346 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -12.26 18.54 41.84 0.78 -11.48 15 2 C 0.33 7.23 14.06 -22.47 -0.32 6.91 15 3 C -0.30 -6.39 5.88 -104.94 -0.62 -7.00 15 4 C 0.31 6.69 14.83 -22.46 -0.33 6.36 15 5 N -0.53 -12.19 18.54 41.85 0.78 -11.41 15 6 C 0.38 7.55 5.49 -83.54 -0.46 7.09 15 7 C -0.35 -6.74 7.33 -38.32 -0.28 -7.02 15 8 H 0.11 2.20 7.31 -52.49 -0.38 1.81 15 9 C 0.08 1.38 4.91 -17.20 -0.08 1.29 15 10 N -0.74 -13.19 11.41 55.60 0.63 -12.56 15 11 Si 0.93 13.98 29.58 -169.99 -5.03 8.95 15 12 H -0.25 -3.99 7.11 56.52 0.40 -3.59 15 13 H -0.27 -4.03 7.11 56.52 0.40 -3.63 15 14 H -0.25 -3.69 7.11 56.52 0.40 -3.28 15 15 N -0.63 -11.37 3.38 -9.69 -0.03 -11.40 15 16 C 0.43 7.15 6.26 -154.78 -0.97 6.18 15 17 N -0.47 -7.44 8.53 -12.40 -0.11 -7.54 15 18 C 0.15 1.70 11.16 -17.64 -0.20 1.51 15 19 C -0.18 -1.93 9.85 -39.00 -0.38 -2.32 15 20 C 0.02 0.25 5.76 -106.64 -0.61 -0.36 15 21 C 0.26 3.68 15.10 -22.48 -0.34 3.34 15 22 N -0.40 -6.25 18.54 41.83 0.78 -5.47 15 23 C 0.02 0.35 7.33 -38.59 -0.28 0.07 15 24 F -0.13 -2.05 16.25 2.25 0.04 -2.01 15 25 H 0.30 4.99 8.29 -40.82 -0.34 4.65 15 26 H 0.41 7.34 8.29 -40.82 -0.34 7.00 15 27 H 0.17 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.14 1.06 8.06 -52.48 -0.42 0.64 15 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -24.61 294.07 -3.32 -27.93 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -0.70 Total: 4.53 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: -4.88 Total: 16.05 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 2.82 Total: -59.88 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 13.98 SS G_CDS: -5.03 Total: 8.95 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -24.61 -3.32 -27.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.385 kcal (2) G-P(sol) polarization free energy of solvation -24.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds