Wall clock time and date at job start Tue Mar 31 2020 06:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.43200 * 120.00472 * 303.91739 * 3 2 1 5 5 N 3.51041 * 140.68780 * 303.91893 * 2 1 3 6 6 C 1.41150 * 120.00158 * 123.91904 * 3 2 1 7 7 C 1.38987 * 119.99563 * 353.74409 * 6 3 2 8 8 H 1.07993 * 120.00174 * 332.23685 * 7 6 3 9 9 C 1.40844 * 119.99574 * 152.24001 * 7 6 3 10 10 N 1.30329 * 120.00655 * 351.92868 * 9 7 6 11 11 Si 1.86810 * 119.99786 * 171.92378 * 9 7 6 12 12 H 1.48498 * 109.46726 * 59.99949 * 11 9 7 13 13 H 1.48493 * 109.47158 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46954 * 300.00301 * 11 9 7 15 15 N 1.38353 * 120.00514 * 173.74532 * 6 3 2 16 16 C 1.39285 * 119.99831 * 123.05239 * 15 6 3 17 17 N 1.32299 * 119.65688 * 359.56619 * 16 15 6 18 18 C 1.31964 * 122.00761 * 179.75154 * 17 16 15 19 19 C 1.37843 * 121.07152 * 0.52554 * 18 17 16 20 20 C 1.40163 * 119.18041 * 359.74274 * 19 18 17 21 21 C 1.43205 * 120.90721 * 180.02562 * 20 19 18 22 22 N 9.48938 * 162.09893 * 92.64881 * 2 1 3 23 23 C 1.39264 * 119.65226 * 179.83739 * 16 15 6 24 24 F 1.35099 * 120.57003 * 359.95830 * 23 16 15 25 25 H 0.96995 * 120.00389 * 185.04351 * 10 9 7 26 26 H 0.96998 * 119.99790 * 302.78069 * 15 6 3 27 27 H 1.08001 * 119.46257 * 180.27575 * 18 17 16 28 28 H 1.08005 * 120.40899 * 179.72673 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2844 -0.6910 1.0291 5 7 3.8520 -1.2410 1.8455 6 6 3.2734 0.6831 -1.0144 7 6 2.5844 1.2436 -2.0834 8 1 1.6436 0.8194 -2.4014 9 6 3.1133 2.3647 -2.7519 10 7 4.1630 2.9726 -2.2752 11 14 2.3104 2.9805 -4.3222 12 1 0.9026 3.3609 -4.0420 13 1 3.0517 4.1644 -4.8259 14 1 2.3381 1.9057 -5.3467 15 7 4.6507 0.7940 -0.9446 16 6 5.4413 0.3220 -1.9897 17 7 4.8685 -0.2390 -3.0420 18 6 5.5721 -0.6975 -4.0599 19 6 6.9483 -0.6203 -4.0657 20 6 7.6048 -0.0394 -2.9720 21 6 9.0330 0.0604 -2.9395 22 7 10.1660 0.1348 -2.9137 23 6 6.8268 0.4405 -1.9134 24 9 7.4094 1.0096 -0.8355 25 1 4.4836 3.7869 -2.6934 26 1 5.0656 1.2041 -0.1696 27 1 5.0615 -1.1440 -4.9004 28 1 7.5138 -1.0029 -4.9025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:43 Heat of formation + Delta-G solvation = 73.724791 kcal Electronic energy + Delta-G solvation = -20528.542709 eV Core-core repulsion = 17073.121712 eV Total energy + Delta-G solvation = -3455.420997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97426 -41.23112 -38.94087 -37.80817 -36.89981 -36.48437 -35.14196 -33.42421 -32.63454 -29.96981 -28.71592 -26.02444 -24.24506 -23.09905 -21.12091 -19.88441 -19.18806 -18.62489 -18.25393 -17.65034 -17.19051 -16.91325 -16.47061 -15.41921 -15.20521 -14.95221 -14.74293 -14.61832 -14.42472 -14.38573 -14.22817 -14.01991 -13.82014 -13.41748 -13.36162 -13.20558 -13.04476 -13.00663 -12.66477 -12.62968 -12.06648 -11.58261 -11.37568 -10.62996 -10.49605 -9.73174 -9.17308 -8.42175 -7.03000 -0.45485 0.14617 0.78821 1.35319 1.45443 1.56821 1.63307 1.92864 2.07097 2.15239 2.17736 2.27476 2.53596 2.64708 2.76539 2.91017 3.04847 3.46615 3.65661 3.76429 3.92290 4.23814 4.60163 4.67443 4.75850 4.79457 4.96671 5.41149 5.51831 5.79828 6.05221 6.19502 6.25545 6.49008 6.72704 7.21307 7.26730 7.40541 7.81463 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.007525 C = 0.005645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.829938 B = 3719.947263 C = 4958.674171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C 0.332 3.668 3 C -0.322 4.322 4 C 0.315 3.685 5 N -0.561 5.561 6 C 0.383 3.617 7 C -0.346 4.346 8 H 0.106 0.894 9 C 0.056 3.944 10 N -0.740 5.740 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.263 1.263 14 H -0.238 1.238 15 N -0.638 5.638 16 C 0.407 3.593 17 N -0.497 5.497 18 C 0.150 3.850 19 C -0.147 4.147 20 C 0.017 3.983 21 C 0.279 3.721 22 N -0.431 5.431 23 C 0.002 3.998 24 F -0.138 7.138 25 H 0.311 0.689 26 H 0.410 0.590 27 H 0.212 0.788 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.753 1.178 -12.972 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.241 5.241 2 C 0.025 3.975 3 C -0.342 4.342 4 C 0.010 3.990 5 N -0.245 5.245 6 C 0.279 3.721 7 C -0.374 4.374 8 H 0.124 0.876 9 C -0.174 4.174 10 N -0.359 5.359 11 Si 0.795 3.205 12 H -0.189 1.189 13 H -0.187 1.187 14 H -0.161 1.161 15 N -0.261 5.261 16 C 0.171 3.829 17 N -0.213 5.213 18 C -0.009 4.009 19 C -0.171 4.171 20 C 0.005 3.995 21 C -0.037 4.037 22 N -0.107 5.107 23 C -0.028 4.028 24 F -0.117 7.117 25 H 0.123 0.877 26 H 0.247 0.753 27 H 0.228 0.772 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.845 0.547 -11.661 13.055 hybrid contribution 0.731 1.057 0.312 1.323 sum 6.576 1.604 -11.349 13.215 Atomic orbital electron populations 1.81042 1.12731 1.17090 1.13210 1.24793 0.91427 0.90299 0.90941 1.12958 0.82650 1.31992 1.06560 1.25407 0.92071 0.90394 0.91178 1.81080 1.10595 1.18096 1.14685 1.16594 0.80282 0.85470 0.89779 1.20258 1.04134 1.05734 1.07228 0.87572 1.27011 0.93764 0.95769 1.00808 1.69441 1.16514 1.13432 1.36510 0.85250 0.79138 0.79245 0.76865 1.18917 1.18734 1.16110 1.41454 1.04233 1.61262 1.19102 1.17994 0.84874 0.91254 0.88778 1.67440 1.40331 1.12727 1.00753 1.23305 0.90482 0.92074 0.95085 1.22245 0.95735 1.01304 0.97852 1.16092 0.84187 1.03141 0.96072 1.25259 0.92163 0.93155 0.93082 1.81223 1.12570 1.08789 1.08095 1.18007 0.90107 1.07214 0.87481 1.91454 1.84246 1.82974 1.53069 0.87684 0.75257 0.77178 0.79462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -26.04 18.54 19.00 0.35 -25.69 15 2 C 0.33 14.92 14.06 88.33 1.24 16.16 15 3 C -0.32 -13.77 5.88 -20.07 -0.12 -13.89 15 4 C 0.32 14.10 14.83 88.33 1.31 15.41 15 5 N -0.56 -26.28 18.54 19.01 0.35 -25.93 15 6 C 0.38 15.09 5.49 39.01 0.21 15.31 15 7 C -0.35 -13.08 7.33 23.09 0.17 -12.91 15 8 H 0.11 4.10 7.31 -2.91 -0.02 4.08 15 9 C 0.06 1.90 4.91 85.55 0.42 2.32 15 10 N -0.74 -25.51 11.41 21.98 0.25 -25.26 15 11 Si 0.98 26.49 29.58 68.60 2.03 28.52 15 12 H -0.26 -7.68 7.11 99.48 0.71 -6.97 15 13 H -0.26 -6.79 7.11 99.48 0.71 -6.09 15 14 H -0.24 -6.09 7.11 99.48 0.71 -5.38 15 15 N -0.64 -23.28 3.38 -184.56 -0.62 -23.91 15 16 C 0.41 13.26 6.26 133.03 0.83 14.09 15 17 N -0.50 -14.48 8.53 -193.15 -1.65 -16.13 15 18 C 0.15 2.83 11.16 84.58 0.94 3.77 15 19 C -0.15 -2.43 9.85 22.64 0.22 -2.21 15 20 C 0.02 0.41 5.76 -21.17 -0.12 0.29 15 21 C 0.28 7.25 15.10 88.34 1.33 8.58 15 22 N -0.43 -12.63 18.54 19.00 0.35 -12.28 15 23 C 0.00 0.05 7.33 22.91 0.17 0.22 15 24 F -0.14 -4.58 16.25 44.97 0.73 -3.85 15 25 H 0.31 9.70 8.29 -92.71 -0.77 8.93 15 26 H 0.41 15.03 8.29 -92.71 -0.77 14.26 15 27 H 0.21 2.14 8.06 -2.91 -0.02 2.12 15 28 H 0.19 1.55 8.06 -2.91 -0.02 1.52 15 Total: -1.00 -53.86 294.07 8.93 -44.93 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.52 Total: 12.47 kcal Atomic # 6 Polarization: 40.52 SS G_CDS: 6.62 Total: 47.14 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -0.96 Total: -129.20 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.73 Total: -3.85 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: 2.03 Total: 28.52 kcal Total: -53.86 8.93 -44.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.655 kcal (2) G-P(sol) polarization free energy of solvation -53.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds