Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00019 * 2 1 4 4 C 1.50700 * 109.47310 * 66.04137 * 3 2 1 5 5 H 1.07994 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99772 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00021 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99578 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47129 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46738 * 120.00543 * 8 6 4 11 11 H 1.48502 * 109.46720 * 240.00380 * 8 6 4 12 12 C 1.38525 * 111.00192 * 236.03847 * 2 1 3 13 13 N 1.32919 * 120.74641 * 123.95671 * 12 2 1 14 14 C 1.32144 * 121.15878 * 179.97438 * 13 12 2 15 15 Cl 1.73610 * 118.80231 * 179.71878 * 14 13 12 16 16 N 1.31795 * 122.39733 * 0.02562 * 14 13 12 17 17 C 1.32865 * 120.62814 * 359.97438 * 16 14 13 18 18 N 1.37522 * 134.78344 * 180.02562 * 17 16 14 19 19 H 0.96998 * 126.27888 * 359.97201 * 18 17 16 20 20 C 1.36638 * 107.43379 * 179.97438 * 18 17 16 21 21 O 1.35345 * 125.08319 * 179.97438 * 20 18 17 22 22 N 1.30746 * 109.82711 * 359.97438 * 20 18 17 23 23 C 1.35715 * 109.39665 * 0.02562 * 22 20 18 24 24 H 1.08996 * 109.47237 * 183.95613 * 1 2 3 25 25 H 1.09000 * 109.47527 * 303.95737 * 1 2 3 26 26 H 1.08999 * 109.46963 * 63.95901 * 1 2 3 27 27 H 1.09002 * 109.46983 * 186.04234 * 3 2 1 28 28 H 1.09004 * 109.47193 * 306.03985 * 3 2 1 29 29 H 0.97001 * 119.99850 * 179.97438 * 7 6 4 30 30 H 0.96703 * 113.99401 * 269.99624 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5825 4.1871 3.1379 9 1 0.8143 3.2448 3.9906 10 1 2.8239 4.5937 3.8441 11 1 0.7559 5.3887 2.8581 12 6 1.9655 -0.7224 -1.0726 13 7 2.8047 -0.1632 -1.9384 14 6 3.2836 -0.8449 -2.9642 15 17 4.3701 -0.0516 -4.0616 16 7 2.9620 -2.1033 -3.1878 17 6 2.1294 -2.7439 -2.3744 18 7 1.6079 -4.0156 -2.3273 19 1 1.7861 -4.7326 -2.9558 20 6 0.7927 -4.0835 -1.2328 21 8 0.0956 -5.1782 -0.8489 22 7 0.7870 -2.9328 -0.6121 23 6 1.5943 -2.0621 -1.2692 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 2.9874 4.9177 0.7772 30 1 -0.7912 -5.2335 -1.2306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161989261.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = 80.087581 kcal Electronic energy + Delta-G solvation = -19640.206020 eV Core-core repulsion = 16306.088390 eV Total energy + Delta-G solvation = -3334.117630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.058 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.61410 -39.69819 -37.52690 -37.24932 -36.29500 -33.48915 -32.49204 -32.07490 -29.31420 -27.42202 -25.85862 -23.90576 -23.42069 -21.93618 -21.10448 -19.72434 -18.44900 -17.59724 -16.96982 -16.44848 -16.13760 -15.48413 -15.10742 -14.58900 -14.48609 -13.95891 -13.39265 -13.24276 -12.82662 -12.12773 -11.79000 -11.58123 -11.45176 -11.25888 -11.18728 -11.01012 -10.78764 -10.58321 -10.43088 -10.10938 -9.72928 -9.37028 -8.99147 -8.84450 -8.46066 -7.60507 -6.07072 -4.11358 0.58767 1.27116 1.40165 2.06042 2.41758 3.29813 3.37376 3.41279 3.47775 3.72668 3.92728 4.31614 4.39535 4.60632 4.68995 5.28352 5.38033 5.47971 5.88316 5.96827 6.13875 6.26920 6.48526 6.69088 7.07043 7.18663 7.34379 7.45533 7.61124 7.73596 7.98098 8.17327 8.31154 8.94376 9.52524 11.03093 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.005716 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.132139 B = 4897.077380 C = 6511.453037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.450 5.450 3 C 0.194 3.806 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.458 3.542 13 N -0.540 5.540 14 C 0.421 3.579 15 Cl 0.028 6.972 16 N -0.547 5.547 17 C 0.314 3.686 18 N -0.580 5.580 19 H 0.428 0.572 20 C 0.435 3.565 21 O -0.434 6.434 22 N -0.431 5.431 23 C -0.064 4.064 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.263 0.737 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -15.076 -8.662 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.163 5.163 3 C 0.072 3.928 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.141 4.141 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.208 3.792 13 N -0.268 5.268 14 C 0.124 3.876 15 Cl 0.056 6.944 16 N -0.275 5.275 17 C 0.071 3.929 18 N -0.208 5.208 19 H 0.268 0.732 20 C 0.130 3.870 21 O -0.235 6.235 22 N -0.161 5.161 23 C -0.191 4.191 24 H 0.096 0.904 25 H 0.115 0.885 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -3.634 -14.572 -7.733 16.892 hybrid contribution -0.499 -0.201 -0.588 0.797 sum -4.133 -14.773 -8.321 17.452 Atomic orbital electron populations 1.22455 0.82590 1.02920 1.02507 1.58686 1.09607 1.19884 1.28084 1.19999 0.97454 0.77770 0.97625 1.21152 1.36233 0.97408 1.01528 0.91556 1.24947 0.94965 0.97154 0.97053 1.69986 1.37340 1.11441 1.33811 0.86414 0.78237 0.79322 0.83298 1.19590 1.20913 1.20978 1.19701 0.87175 0.87630 0.84664 1.68261 1.17265 1.36897 1.04346 1.22268 0.91157 0.84741 0.89455 1.98423 1.59027 1.77730 1.59205 1.66446 1.18952 1.09492 1.32636 1.17965 0.95134 0.85991 0.93763 1.42835 1.41200 1.10890 1.25879 0.73195 1.20137 0.93691 0.88017 0.85145 1.84905 1.32070 1.36848 1.69665 1.70580 1.20619 0.97817 1.27097 1.19557 1.05567 0.96039 0.97951 0.90421 0.88547 0.94868 0.92883 0.96305 0.92736 0.73313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.12 60.06 0.55 1.32 16 2 N -0.45 -10.06 4.78 -182.03 -0.87 -10.93 16 3 C 0.19 5.05 4.00 -4.98 -0.02 5.03 16 4 C -0.52 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.07 1.78 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.46 9.54 6.42 -154.56 -0.99 8.54 16 13 N -0.54 -11.38 8.73 -10.66 -0.09 -11.47 16 14 C 0.42 7.75 8.17 -91.85 -0.75 7.00 16 15 Cl 0.03 0.45 29.25 -51.86 -1.52 -1.07 16 16 N -0.55 -9.26 10.43 -10.90 -0.11 -9.38 16 17 C 0.31 5.00 8.51 -155.55 -1.32 3.68 16 18 N -0.58 -6.59 6.22 -13.39 -0.08 -6.68 16 19 H 0.43 3.24 8.96 -40.82 -0.37 2.88 16 20 C 0.44 5.25 9.41 -88.70 -0.83 4.41 16 21 O -0.43 -3.55 13.63 -17.73 -0.24 -3.79 16 22 N -0.43 -6.96 9.91 -12.04 -0.12 -7.08 16 23 C -0.06 -1.17 6.58 -84.51 -0.56 -1.72 16 24 H 0.08 1.34 6.37 -51.93 -0.33 1.01 16 25 H 0.10 1.86 6.76 -51.93 -0.35 1.51 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 1.51 7.55 -51.93 -0.39 1.12 16 28 H 0.02 0.53 8.12 -51.93 -0.42 0.10 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.41 0.98 9.06 45.56 0.41 1.39 16 LS Contribution 283.62 15.07 4.27 4.27 Total: -1.00 -33.03 283.62 -8.75 -41.78 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -1.38 Total: -1.81 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: -4.32 Total: 15.22 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -0.54 Total: -70.75 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.24 Total: -3.79 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -1.52 Total: -1.07 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.03 -8.75 -41.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161989261.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.866 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds