Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00019 * 2 1 4 4 C 1.50700 * 109.47310 * 66.04137 * 3 2 1 5 5 H 1.07994 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99772 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00021 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99578 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47129 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.46738 * 120.00543 * 8 6 4 11 11 H 1.48502 * 109.46720 * 240.00380 * 8 6 4 12 12 C 1.38525 * 111.00192 * 236.03847 * 2 1 3 13 13 N 1.32919 * 120.74641 * 123.95671 * 12 2 1 14 14 C 1.32144 * 121.15878 * 179.97438 * 13 12 2 15 15 Cl 1.73610 * 118.80231 * 179.71878 * 14 13 12 16 16 N 1.31795 * 122.39733 * 0.02562 * 14 13 12 17 17 C 1.32865 * 120.62814 * 359.97438 * 16 14 13 18 18 N 1.37522 * 134.78344 * 180.02562 * 17 16 14 19 19 H 0.96998 * 126.27888 * 359.97201 * 18 17 16 20 20 C 1.36638 * 107.43379 * 179.97438 * 18 17 16 21 21 O 1.35345 * 125.08319 * 179.97438 * 20 18 17 22 22 N 1.30746 * 109.82711 * 359.97438 * 20 18 17 23 23 C 1.35715 * 109.39665 * 0.02562 * 22 20 18 24 24 H 1.08996 * 109.47237 * 183.95613 * 1 2 3 25 25 H 1.09000 * 109.47527 * 303.95737 * 1 2 3 26 26 H 1.08999 * 109.46963 * 63.95901 * 1 2 3 27 27 H 1.09002 * 109.46983 * 186.04234 * 3 2 1 28 28 H 1.09004 * 109.47193 * 306.03985 * 3 2 1 29 29 H 0.97001 * 119.99850 * 179.97438 * 7 6 4 30 30 H 0.96703 * 113.99401 * 269.99624 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0276 3.3492 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5825 4.1871 3.1379 9 1 0.8143 3.2448 3.9906 10 1 2.8239 4.5937 3.8441 11 1 0.7559 5.3887 2.8581 12 6 1.9655 -0.7224 -1.0726 13 7 2.8047 -0.1632 -1.9384 14 6 3.2836 -0.8449 -2.9642 15 17 4.3701 -0.0516 -4.0616 16 7 2.9620 -2.1033 -3.1878 17 6 2.1294 -2.7439 -2.3744 18 7 1.6079 -4.0156 -2.3273 19 1 1.7861 -4.7326 -2.9558 20 6 0.7927 -4.0835 -1.2328 21 8 0.0956 -5.1782 -0.8489 22 7 0.7870 -2.9328 -0.6121 23 6 1.5943 -2.0621 -1.2692 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3634 0.5740 0.8524 26 1 -0.3633 0.4512 -0.9233 27 1 3.0797 1.3443 -0.1082 28 1 1.5611 1.9273 -0.8310 29 1 2.9874 4.9177 0.7772 30 1 -0.7912 -5.2335 -1.2306 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161989261.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = 52.578953 kcal Electronic energy + Delta-G solvation = -19641.398884 eV Core-core repulsion = 16306.088390 eV Total energy + Delta-G solvation = -3335.310494 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.058 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.84593 -41.00686 -38.87965 -38.34947 -37.60698 -35.11336 -34.22610 -33.42883 -30.76536 -29.27248 -27.44413 -25.46273 -24.78757 -23.33854 -22.58249 -20.83339 -19.66049 -18.79450 -18.59222 -18.11331 -17.48621 -16.93116 -16.37449 -16.29548 -16.06668 -15.50416 -14.91477 -14.58394 -14.08567 -13.78757 -13.45068 -13.03555 -12.81582 -12.74704 -12.65796 -12.56001 -12.45108 -12.33690 -12.07499 -11.71355 -11.36225 -10.96753 -10.62202 -10.39662 -10.31622 -9.12159 -8.19156 -6.31683 -0.72462 -0.11350 0.09279 0.97556 1.29646 1.44959 1.46113 1.59428 2.26235 2.35575 2.44051 2.58573 3.04630 3.14177 3.25193 3.49693 3.98439 4.25120 4.41481 4.51093 4.77981 4.89988 5.07804 5.23479 5.35384 5.57920 5.69702 5.92141 5.96043 6.24780 6.40881 6.55953 6.71859 6.85370 7.37394 8.92277 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.005716 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.132139 B = 4897.077380 C = 6511.453037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.466 5.466 3 C 0.220 3.780 4 C -0.537 4.537 5 H 0.070 0.930 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.430 3.570 13 N -0.571 5.571 14 C 0.402 3.598 15 Cl 0.044 6.956 16 N -0.530 5.530 17 C 0.309 3.691 18 N -0.555 5.555 19 H 0.449 0.551 20 C 0.481 3.519 21 O -0.424 6.424 22 N -0.472 5.472 23 C -0.065 4.065 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.031 0.969 27 H 0.017 0.983 28 H -0.012 1.012 29 H 0.266 0.734 30 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -17.538 -8.377 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.179 5.179 3 C 0.095 3.905 4 C -0.575 4.575 5 H 0.088 0.912 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.182 3.818 13 N -0.299 5.299 14 C 0.105 3.895 15 Cl 0.072 6.928 16 N -0.257 5.257 17 C 0.064 3.936 18 N -0.186 5.186 19 H 0.294 0.706 20 C 0.175 3.825 21 O -0.229 6.229 22 N -0.204 5.204 23 C -0.191 4.191 24 H 0.116 0.884 25 H 0.108 0.892 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.006 0.994 29 H 0.075 0.925 30 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -4.909 -17.115 -7.503 19.322 hybrid contribution -0.177 0.277 -0.790 0.856 sum -5.086 -16.839 -8.293 19.447 Atomic orbital electron populations 1.22439 0.81260 1.03984 1.02047 1.58735 1.11047 1.17714 1.30416 1.19406 0.95043 0.79924 0.96090 1.21466 1.36131 0.97893 1.02036 0.91158 1.25893 0.94650 0.97845 1.00721 1.70124 1.38507 1.11898 1.36057 0.85280 0.78026 0.78270 0.78696 1.18425 1.20680 1.20171 1.19725 0.88201 0.88762 0.85125 1.68122 1.17753 1.38611 1.05378 1.22421 0.92163 0.85386 0.89576 1.98415 1.58419 1.77636 1.58314 1.66543 1.18303 1.08715 1.32160 1.18103 0.94930 0.87462 0.93082 1.42751 1.40050 1.09750 1.26011 0.70569 1.20190 0.91567 0.87482 0.83261 1.84904 1.33956 1.34413 1.69652 1.70575 1.22113 0.99097 1.28627 1.19431 1.05742 0.95269 0.98702 0.88367 0.89245 0.95049 0.96493 0.99379 0.92521 0.69498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.84 9.12 127.69 1.16 3.01 16 2 N -0.47 -21.58 4.78 -729.81 -3.49 -25.07 16 3 C 0.22 12.07 4.00 85.56 0.34 12.42 16 4 C -0.54 -30.30 8.46 25.60 0.22 -30.09 16 5 H 0.07 3.82 7.12 -2.91 -0.02 3.80 16 6 C 0.01 0.46 5.46 84.66 0.46 0.93 16 7 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 8 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.43 18.43 6.42 133.38 0.86 19.28 16 13 N -0.57 -25.09 8.73 -187.65 -1.64 -26.73 16 14 C 0.40 15.01 8.17 180.78 1.48 16.49 16 15 Cl 0.04 1.42 29.25 -2.72 -0.08 1.34 16 16 N -0.53 -17.45 10.43 -188.41 -1.96 -19.42 16 17 C 0.31 9.29 8.51 133.74 1.14 10.43 16 18 N -0.55 -10.61 6.22 -306.99 -1.91 -12.52 16 19 H 0.45 4.80 8.96 -92.71 -0.83 3.97 16 20 C 0.48 9.75 9.41 179.68 1.69 11.44 16 21 O -0.42 -4.78 13.63 -86.34 -1.18 -5.95 16 22 N -0.47 -14.24 9.91 -305.80 -3.03 -17.27 16 23 C -0.07 -2.32 6.58 39.61 0.26 -2.06 16 24 H 0.10 3.35 6.37 -2.39 -0.02 3.34 16 25 H 0.09 3.52 6.76 -2.39 -0.02 3.50 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.02 1.03 7.55 -2.39 -0.02 1.02 16 28 H -0.01 -0.69 8.12 -2.38 -0.02 -0.71 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.44 -0.41 9.06 -74.06 -0.67 -1.08 16 Total: -1.00 -74.24 283.62 -3.63 -77.87 By element: Atomic # 1 Polarization: -4.07 SS G_CDS: -0.26 Total: -4.33 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 7.61 Total: 41.84 kcal Atomic # 7 Polarization: -144.87 SS G_CDS: -11.75 Total: -156.62 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -1.18 Total: -5.95 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: 1.42 SS G_CDS: -0.08 Total: 1.34 kcal Total: -74.24 -3.63 -77.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161989261.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.450 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds