Wall clock time and date at job start Tue Mar 31 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31461 * 1 3 3 Si 1.86803 * 119.99899 * 2 1 4 4 H 1.48504 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46904 * 299.99640 * 3 2 1 6 6 H 1.48499 * 109.47294 * 59.99830 * 3 2 1 7 7 C 1.38923 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00154 * 179.97438 * 7 2 1 9 9 N 1.36832 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.37839 * 119.99917 * 179.97438 * 9 7 2 11 11 N 1.32742 * 120.91699 * 359.72431 * 10 9 7 12 12 C 1.32261 * 121.49006 * 180.27186 * 11 10 9 13 13 C 1.50692 * 118.51175 * 179.97438 * 12 11 10 14 14 F 1.39896 * 109.47354 * 195.01952 * 13 12 11 15 15 F 1.39903 * 109.47150 * 315.02326 * 13 12 11 16 16 F 1.39904 * 109.47164 * 75.01952 * 13 12 11 17 17 N 1.31255 * 122.98039 * 359.97438 * 12 11 10 18 18 C 1.34085 * 120.47850 * 0.02562 * 17 12 11 19 19 C 1.40159 * 122.00055 * 179.97438 * 18 17 12 20 20 C 1.36330 * 119.58255 * 180.02562 * 19 18 17 21 21 C 1.39213 * 121.03004 * 0.03752 * 20 19 18 22 22 C 1.36423 * 120.90223 * 359.97438 * 21 20 19 23 23 C 1.39896 * 119.49942 * 359.97438 * 22 21 20 24 24 H 0.97003 * 120.00478 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00490 * 359.97438 * 9 7 2 26 26 H 1.08002 * 120.20960 * 0.02562 * 19 18 17 27 27 H 1.07997 * 119.48709 * 180.02562 * 20 19 18 28 28 H 1.07999 * 119.54896 * 179.97438 * 21 20 19 29 29 H 1.08000 * 120.24604 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7086 1.3465 -0.0006 5 1 1.8899 2.3964 -1.2126 6 1 1.8898 2.3965 1.2125 7 6 2.0093 -1.2031 0.0005 8 1 3.0893 -1.2031 0.0001 9 7 1.3251 -2.3881 0.0005 10 6 2.0143 -3.5818 0.0005 11 7 3.3416 -3.6030 -0.0049 12 6 4.0143 -4.7418 -0.0104 13 6 5.5202 -4.6875 -0.0170 14 9 6.0306 -5.9431 -0.3637 15 9 5.9485 -3.7363 -0.9492 16 9 5.9797 -4.3327 1.2559 17 7 3.4297 -5.9170 -0.0102 18 6 2.0922 -6.0112 -0.0049 19 6 1.4349 -7.2491 -0.0052 20 6 0.0721 -7.2875 -0.0002 21 6 -0.6788 -6.1153 0.0043 22 6 -0.0711 -4.8939 0.0044 23 6 1.3259 -4.8196 0.0005 24 1 -0.4851 0.8400 0.0004 25 1 0.3551 -2.3882 0.0005 26 1 2.0043 -8.1668 -0.0093 27 1 -0.4328 -8.2422 0.0001 28 1 -1.7572 -6.1736 0.0078 29 1 -0.6640 -3.9912 0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163178406.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:05 Heat of formation + Delta-G solvation = -99.668344 kcal Electronic energy + Delta-G solvation = -21680.769902 eV Core-core repulsion = 17767.140828 eV Total energy + Delta-G solvation = -3913.629074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.16613 -48.69615 -48.64235 -42.01229 -38.56604 -38.01722 -34.91248 -33.10230 -32.07556 -31.20555 -28.03045 -27.33500 -24.71151 -24.05343 -22.63591 -20.78851 -20.34056 -19.59189 -19.51412 -18.34110 -18.04732 -17.70827 -16.52850 -16.22516 -16.05070 -15.62575 -15.48172 -15.46100 -15.24538 -15.09413 -14.82171 -14.79169 -14.70691 -13.82801 -13.78621 -13.55799 -13.20208 -13.07446 -12.78484 -12.75126 -12.38542 -12.13560 -11.43813 -11.40488 -10.48460 -10.03387 -9.95691 -8.93806 -8.90396 -6.08447 -0.50481 -0.05070 1.00187 1.36506 1.39220 1.42925 1.53223 2.03425 2.08244 2.37892 2.58710 2.78642 3.07876 3.11263 3.51813 3.72595 3.80788 3.90751 4.18565 4.33157 4.49484 4.64420 4.88139 5.12435 5.13705 5.30614 5.41172 5.57121 5.63431 5.98015 6.19684 6.46495 6.84745 6.98745 7.50273 8.23208 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.012732 B = 0.007658 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.667442 B = 3655.280197 C = 5679.449035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C -0.001 4.001 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.111 0.889 9 N -0.468 5.468 10 C 0.344 3.656 11 N -0.610 5.610 12 C 0.282 3.718 13 C 0.553 3.447 14 F -0.157 7.157 15 F -0.168 7.168 16 F -0.171 7.171 17 N -0.590 5.590 18 C 0.166 3.834 19 C -0.134 4.134 20 C -0.065 4.065 21 C -0.141 4.141 22 C -0.086 4.086 23 C -0.201 4.201 24 H 0.295 0.705 25 H 0.414 0.586 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.159 0.841 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -7.363 -0.034 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.208 4.208 3 Si 0.827 3.173 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.439 4.439 8 H 0.129 0.871 9 N -0.071 5.071 10 C 0.090 3.910 11 N -0.345 5.345 12 C 0.005 3.995 13 C 0.496 3.504 14 F -0.138 7.138 15 F -0.149 7.149 16 F -0.152 7.152 17 N -0.321 5.321 18 C 0.044 3.956 19 C -0.155 4.155 20 C -0.085 4.085 21 C -0.161 4.161 22 C -0.107 4.107 23 C -0.210 4.210 24 H 0.105 0.895 25 H 0.253 0.747 26 H 0.164 0.836 27 H 0.188 0.812 28 H 0.177 0.823 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.451 -6.912 -0.038 6.927 hybrid contribution -0.561 1.062 0.014 1.201 sum -1.012 -5.850 -0.024 5.937 Atomic orbital electron populations 1.69644 1.07389 1.31517 1.42828 1.26467 0.96642 1.03432 0.94244 0.84651 0.78495 0.75221 0.78896 1.18773 1.18964 1.18945 1.20450 0.94448 0.82413 1.46546 0.87083 1.40988 1.08918 1.02491 1.54658 1.18314 0.88048 0.86015 0.98627 1.67109 1.08118 1.29252 1.30037 1.21935 0.94180 0.86414 0.96943 1.17151 0.85425 0.73824 0.74004 1.93195 1.88066 1.40703 1.91860 1.93197 1.90870 1.65000 1.65874 1.93189 1.89994 1.91932 1.40133 1.68253 1.10789 1.24869 1.28159 1.18984 0.88149 0.93752 0.94698 1.20795 0.95291 0.94965 1.04408 1.21315 0.92557 0.99996 0.94585 1.21133 1.01698 0.91075 1.02182 1.20871 0.91414 0.99902 0.98531 1.19038 0.96548 0.93252 1.12166 0.89462 0.74671 0.83581 0.81217 0.82303 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -41.03 13.05 21.66 0.28 -40.75 15 2 C 0.00 -0.04 5.50 84.91 0.47 0.43 15 3 Si 1.01 37.09 29.55 68.60 2.03 39.11 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 5 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 7 C -0.31 -15.25 9.72 84.08 0.82 -14.43 15 8 H 0.11 5.81 7.12 -2.91 -0.02 5.79 15 9 N -0.47 -22.31 5.34 -187.85 -1.00 -23.32 15 10 C 0.34 16.38 7.50 133.98 1.00 17.39 15 11 N -0.61 -30.20 8.96 -184.56 -1.65 -31.85 15 12 C 0.28 12.94 7.08 138.77 0.98 13.92 15 13 C 0.55 22.32 3.48 71.23 0.25 22.57 15 14 F -0.16 -5.84 16.84 44.97 0.76 -5.08 15 15 F -0.17 -6.74 17.18 44.97 0.77 -5.97 15 16 F -0.17 -6.70 17.30 44.97 0.78 -5.92 15 17 N -0.59 -25.99 9.80 -181.80 -1.78 -27.77 15 18 C 0.17 6.77 6.61 40.12 0.27 7.04 15 19 C -0.13 -4.13 10.01 22.29 0.22 -3.91 15 20 C -0.06 -1.54 9.95 22.06 0.22 -1.32 15 21 C -0.14 -3.60 9.96 22.08 0.22 -3.38 15 22 C -0.09 -2.91 9.54 22.25 0.21 -2.70 15 23 C -0.20 -8.38 5.76 -21.19 -0.12 -8.50 15 24 H 0.30 12.60 8.31 -92.71 -0.77 11.83 15 25 H 0.41 18.71 6.15 -92.71 -0.57 18.14 15 26 H 0.15 3.93 8.06 -2.91 -0.02 3.90 15 27 H 0.17 2.45 8.06 -2.91 -0.02 2.43 15 28 H 0.16 2.82 8.06 -2.91 -0.02 2.79 15 29 H 0.12 3.96 6.59 -2.91 -0.02 3.95 15 Total: -1.00 -57.51 276.79 5.39 -52.12 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.67 Total: 22.33 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 4.54 Total: 27.10 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.16 Total: -123.69 kcal Atomic # 9 Polarization: -19.29 SS G_CDS: 2.31 Total: -16.98 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.11 kcal Total: -57.51 5.39 -52.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163178406.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.546 kcal (2) G-P(sol) polarization free energy of solvation -57.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds