Wall clock time and date at job start Tue Mar 31 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47309 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47121 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.47105 * 59.99966 * 3 2 1 7 7 C 1.38895 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00155 * 179.97438 * 7 2 1 9 9 N 1.36814 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.38519 * 120.00124 * 179.97438 * 9 7 2 11 11 N 1.32105 * 119.75586 * 359.96360 * 10 9 7 12 12 C 1.33790 * 119.64516 * 179.97438 * 11 10 9 13 13 C 1.40568 * 121.00180 * 180.02562 * 12 11 10 14 14 C 1.36121 * 119.72774 * 180.02562 * 13 12 11 15 15 C 1.39345 * 120.93598 * 359.97438 * 14 13 12 16 16 C 1.36146 * 120.95448 * 0.02562 * 15 14 13 17 17 C 1.40479 * 119.75139 * 0.02562 * 16 15 14 18 18 N 1.33926 * 120.96676 * 180.02562 * 17 16 15 19 19 C 1.31120 * 119.86311 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.69866 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47331 * 4.99524 * 20 19 18 22 22 F 1.39897 * 109.47217 * 124.99943 * 20 19 18 23 23 F 1.39906 * 109.46505 * 244.99867 * 20 19 18 24 24 H 0.96997 * 120.00340 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00018 * 0.02562 * 9 7 2 26 26 H 1.08002 * 120.13980 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.53721 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.51968 * 179.72435 * 15 14 13 29 29 H 1.08004 * 120.12949 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0095 -1.2029 -0.0005 8 1 3.0895 -1.2029 -0.0010 9 7 1.3255 -2.3877 -0.0016 10 6 2.0181 -3.5873 -0.0027 11 7 3.3391 -3.5817 -0.0034 12 6 4.0058 -4.7416 -0.0039 13 6 5.4112 -4.7689 -0.0041 14 6 6.0631 -5.9639 -0.0052 15 6 5.3570 -7.1652 -0.0055 16 6 3.9956 -7.1772 -0.0053 17 6 3.2877 -5.9637 -0.0053 18 7 1.9486 -5.9472 -0.0046 19 6 1.3098 -4.8021 -0.0041 20 6 -0.1971 -4.7877 -0.0027 21 9 -0.6758 -6.0971 0.1127 22 9 -0.6552 -4.0267 1.0781 23 9 -0.6591 -4.2259 -1.1978 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3877 -0.0023 26 1 5.9716 -3.8457 -0.0043 27 1 7.1430 -5.9813 -0.0058 28 1 5.8975 -8.1001 -0.0109 29 1 3.4617 -8.1160 -0.0060 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:09 Heat of formation + Delta-G solvation = -81.790977 kcal Electronic energy + Delta-G solvation = -21970.940638 eV Core-core repulsion = 18058.086785 eV Total energy + Delta-G solvation = -3912.853853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.72229 -47.22041 -47.18239 -40.46984 -37.37736 -35.62525 -33.68859 -32.31603 -30.44274 -29.03381 -26.53719 -25.58596 -22.68890 -22.60139 -21.57657 -19.08911 -18.75165 -18.07550 -17.76530 -17.46113 -16.71079 -15.73494 -14.96841 -14.83680 -14.52514 -14.08195 -13.98429 -13.95232 -13.72457 -13.61245 -13.39283 -13.33287 -13.26626 -12.25434 -12.21926 -12.08335 -11.40656 -11.40443 -11.16555 -11.09557 -11.04950 -10.62267 -10.50279 -10.14033 -9.08988 -8.34013 -8.22432 -7.37121 -7.10076 -4.18226 0.80268 1.42870 2.64062 2.91004 2.96457 2.98772 3.04290 3.35976 3.68813 3.99598 4.30129 4.43102 4.48890 4.69691 5.03638 5.07405 5.20718 5.27372 5.41615 5.62778 5.84850 5.96797 6.21758 6.55483 6.64983 6.84676 6.90957 6.95288 7.21931 7.37759 7.95489 8.14994 8.50331 8.66424 9.14071 10.01781 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.014885 B = 0.007428 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.651496 B = 3768.833232 C = 5474.982296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.273 4.273 8 H 0.129 0.871 9 N -0.474 5.474 10 C 0.297 3.703 11 N -0.526 5.526 12 C 0.201 3.799 13 C -0.138 4.138 14 C -0.069 4.069 15 C -0.186 4.186 16 C -0.026 4.026 17 C -0.053 4.053 18 N -0.350 5.350 19 C -0.043 4.043 20 C 0.524 3.476 21 F -0.169 7.169 22 F -0.172 7.172 23 F -0.173 7.173 24 H 0.288 0.712 25 H 0.411 0.589 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.071 -6.280 -0.001 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.406 4.406 8 H 0.146 0.854 9 N -0.075 5.075 10 C 0.044 3.956 11 N -0.254 5.254 12 C 0.061 3.939 13 C -0.159 4.159 14 C -0.089 4.089 15 C -0.208 4.208 16 C -0.046 4.046 17 C -0.181 4.181 18 N -0.061 5.061 19 C -0.211 4.211 20 C 0.468 3.532 21 F -0.150 7.150 22 F -0.153 7.153 23 F -0.155 7.155 24 H 0.099 0.901 25 H 0.249 0.751 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.797 -5.806 0.000 6.937 hybrid contribution -0.532 0.759 -0.002 0.927 sum 3.265 -5.046 -0.001 6.011 Atomic orbital electron populations 1.69668 1.06596 1.30392 1.41980 1.25788 0.95935 1.01316 0.95414 0.85480 0.79925 0.78815 0.78487 1.18187 1.19842 1.19846 1.20419 0.94764 0.81324 1.44107 0.85371 1.41322 1.08985 1.02700 1.54468 1.18343 0.89733 0.84949 1.02624 1.68399 1.04507 1.25774 1.26733 1.19324 0.94646 0.88346 0.91562 1.20536 0.91535 0.98396 1.05451 1.20776 0.99456 0.92225 0.96485 1.20458 0.93699 0.97793 1.08893 1.20513 0.93661 0.95659 0.94748 1.18844 0.88267 0.94712 1.16301 1.67683 1.09520 1.26192 1.02729 1.21123 0.92068 0.91653 1.16287 1.17935 0.87529 0.73857 0.73873 1.93170 1.89759 1.36397 1.95682 1.93215 1.90353 1.75998 1.55775 1.93226 1.90255 1.85244 1.46766 0.90138 0.75081 0.85460 0.86230 0.86363 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.89 13.05 55.49 0.72 -20.17 15 2 C 0.03 0.59 5.50 -17.45 -0.10 0.49 15 3 Si 0.95 18.27 29.55 -169.99 -5.02 13.24 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 6 H -0.27 -5.20 7.11 56.52 0.40 -4.79 15 7 C -0.27 -6.78 9.70 -15.09 -0.15 -6.93 15 8 H 0.13 3.19 7.07 -52.49 -0.37 2.82 15 9 N -0.47 -11.61 5.16 -10.97 -0.06 -11.67 15 10 C 0.30 7.07 7.35 -155.18 -1.14 5.93 15 11 N -0.53 -12.39 9.19 -10.04 -0.09 -12.48 15 12 C 0.20 4.24 6.59 -84.80 -0.56 3.68 15 13 C -0.14 -2.38 9.98 -39.46 -0.39 -2.78 15 14 C -0.07 -0.97 9.95 -39.93 -0.40 -1.37 15 15 C -0.19 -2.61 9.95 -39.92 -0.40 -3.00 15 16 C -0.03 -0.43 9.98 -39.49 -0.39 -0.83 15 17 C -0.05 -1.09 6.59 -84.77 -0.56 -1.65 15 18 N -0.35 -7.50 9.83 -6.87 -0.07 -7.57 15 19 C -0.04 -0.96 6.30 -82.00 -0.52 -1.47 15 20 C 0.52 10.66 2.80 36.01 0.10 10.76 15 21 F -0.17 -3.22 16.86 2.25 0.04 -3.19 15 22 F -0.17 -3.51 15.80 2.25 0.04 -3.48 15 23 F -0.17 -3.51 16.65 2.25 0.04 -3.48 15 24 H 0.29 6.48 8.31 -40.82 -0.34 6.14 15 25 H 0.41 10.02 5.24 -40.82 -0.21 9.80 15 26 H 0.13 2.05 8.06 -52.49 -0.42 1.62 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 29 H 0.12 1.77 8.06 -52.48 -0.42 1.34 15 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -26.30 274.95 -6.17 -32.47 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -1.41 Total: 9.33 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -4.50 Total: 2.85 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.51 Total: -51.89 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 0.11 Total: -10.14 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.30 -6.17 -32.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.324 kcal (2) G-P(sol) polarization free energy of solvation -26.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds