Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86795 * 120.00140 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99829 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99457 * 3 2 1 7 7 C 1.38928 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00349 * 180.02562 * 7 2 1 9 9 N 1.36840 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.37826 * 119.99452 * 180.27742 * 9 7 2 11 11 N 1.32750 * 120.92228 * 359.71984 * 10 9 7 12 12 C 1.32261 * 121.48819 * 179.97438 * 11 10 9 13 13 N 1.31253 * 122.98236 * 359.97438 * 12 11 10 14 14 C 1.34078 * 120.47971 * 0.02562 * 13 12 11 15 15 C 1.40169 * 121.99368 * 179.97438 * 14 13 12 16 16 C 1.36326 * 119.58056 * 180.02562 * 15 14 13 17 17 C 1.39217 * 121.02842 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.54529 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.47525 * 0.02562 * 18 17 16 20 20 F 1.39903 * 109.46791 * 120.00224 * 18 17 16 21 21 F 1.39896 * 109.47301 * 240.00132 * 18 17 16 22 22 C 1.36418 * 120.90188 * 0.02562 * 17 16 15 23 23 C 1.39891 * 119.50771 * 359.69862 * 22 17 16 24 24 H 0.96999 * 119.99827 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99932 * 359.97438 * 9 7 2 26 26 H 1.07998 * 118.50761 * 180.02562 * 12 11 10 27 27 H 1.08000 * 120.20517 * 0.03877 * 15 14 13 28 28 H 1.08002 * 119.48803 * 179.97438 * 16 15 14 29 29 H 1.08003 * 120.24373 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 3.1026 1.6963 -1.2125 5 1 1.2838 2.7465 -0.0006 6 1 3.1024 1.6964 1.2126 7 6 2.0094 -1.2032 0.0005 8 1 3.0893 -1.2032 0.0010 9 7 1.3251 -2.3882 0.0005 10 6 2.0143 -3.5818 0.0069 11 7 3.3416 -3.6031 0.0074 12 6 4.0142 -4.7419 0.0140 13 7 3.4296 -5.9170 0.0208 14 6 2.0921 -6.0112 0.0208 15 6 1.4348 -7.2492 0.0275 16 6 0.0721 -7.2877 0.0267 17 6 -0.6789 -6.1155 0.0189 18 6 -2.1836 -6.1969 0.0177 19 9 -2.5781 -7.5392 0.0259 20 9 -2.6861 -5.5568 1.1557 21 9 -2.6837 -5.5705 -1.1288 22 6 -0.0712 -4.8941 0.0113 23 6 1.3257 -4.8195 0.0177 24 1 -0.4850 0.8400 -0.0004 25 1 0.3551 -2.3881 0.0005 26 1 5.0935 -4.7031 0.0145 27 1 2.0044 -8.1668 0.0333 28 1 -0.4328 -8.2424 0.0314 29 1 -0.6642 -3.9915 0.0049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181890.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -92.333595 kcal Electronic energy + Delta-G solvation = -21497.736414 eV Core-core repulsion = 17584.425399 eV Total energy + Delta-G solvation = -3913.311015 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.83991 -47.37975 -47.28163 -40.35950 -37.19379 -36.27149 -33.24439 -31.60532 -30.64807 -29.80756 -25.97134 -25.48597 -23.36729 -22.69374 -21.15567 -19.10798 -18.51395 -18.15725 -18.09806 -17.68066 -16.64261 -15.36055 -15.14234 -14.66143 -14.31255 -14.20741 -14.12248 -14.09987 -13.81127 -13.76477 -13.55307 -13.48047 -13.18356 -12.80283 -12.23568 -12.12642 -11.67722 -11.58218 -11.25214 -11.15593 -11.00327 -10.74833 -9.78437 -9.73997 -8.91811 -8.68181 -8.06404 -7.40157 -7.27389 -4.33013 1.00430 1.42814 2.55106 2.88308 2.91867 2.95178 3.04256 3.47799 3.58617 4.13367 4.27716 4.39929 4.41202 4.76040 5.01992 5.06871 5.07558 5.26977 5.46416 5.66030 5.84318 6.11144 6.28492 6.39814 6.54882 6.66774 6.77572 6.96293 7.08590 7.53227 7.91862 8.17072 8.54974 8.74129 9.45446 9.83740 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.005907 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.552299 B = 4738.959242 C = 6223.007161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.270 4.270 8 H 0.131 0.869 9 N -0.457 5.457 10 C 0.340 3.660 11 N -0.608 5.608 12 C 0.358 3.642 13 N -0.632 5.632 14 C 0.239 3.761 15 C -0.147 4.147 16 C -0.043 4.043 17 C -0.252 4.252 18 C 0.513 3.487 19 F -0.184 7.184 20 F -0.183 7.183 21 F -0.183 7.183 22 C -0.011 4.011 23 C -0.200 4.200 24 H 0.292 0.708 25 H 0.411 0.589 26 H 0.174 0.826 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 -6.015 0.020 6.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.403 4.403 8 H 0.149 0.851 9 N -0.055 5.055 10 C 0.087 3.913 11 N -0.340 5.340 12 C 0.066 3.934 13 N -0.361 5.361 14 C 0.109 3.891 15 C -0.169 4.169 16 C -0.064 4.064 17 C -0.256 4.256 18 C 0.459 3.541 19 F -0.166 7.166 20 F -0.164 7.164 21 F -0.164 7.164 22 C -0.033 4.033 23 C -0.209 4.209 24 H 0.103 0.897 25 H 0.249 0.751 26 H 0.191 0.809 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.440 -5.437 0.016 5.625 hybrid contribution -1.409 0.825 -0.002 1.633 sum -2.849 -4.612 0.014 5.421 Atomic orbital electron populations 1.69617 1.06711 1.31037 1.40791 1.25858 0.95971 1.01600 0.95084 0.85529 0.78919 0.77773 0.80160 1.18714 1.20105 1.18709 1.20480 0.94995 0.81337 1.43450 0.85145 1.41171 1.09146 1.03083 1.52104 1.18057 0.89105 0.84339 0.99826 1.67773 1.06102 1.30777 1.29320 1.24199 0.99669 0.82679 0.86893 1.68790 1.08193 1.27813 1.31313 1.18748 0.90085 0.91601 0.88660 1.20334 0.92958 0.96450 1.07121 1.20411 0.93901 0.96567 0.95511 1.19117 0.89659 0.96085 1.20749 1.18351 0.89336 0.72969 0.73435 1.93108 1.92506 1.34676 1.96294 1.93193 1.89472 1.82045 1.51727 1.93191 1.89555 1.82633 1.51056 1.20288 0.93688 0.96210 0.93094 1.18669 0.93661 0.94989 1.13612 0.89738 0.75084 0.80895 0.84858 0.85317 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.54 13.05 55.50 0.72 -18.82 15 2 C 0.03 0.57 5.50 -17.45 -0.10 0.47 15 3 Si 0.95 17.36 29.55 -169.99 -5.02 12.34 15 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 5 H -0.28 -4.95 7.11 56.52 0.40 -4.55 15 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 7 C -0.27 -6.28 9.72 -15.06 -0.15 -6.43 15 8 H 0.13 3.06 7.12 -52.49 -0.37 2.69 15 9 N -0.46 -10.42 5.34 -10.72 -0.06 -10.48 15 10 C 0.34 7.66 7.50 -154.89 -1.16 6.50 15 11 N -0.61 -13.53 9.22 -13.52 -0.12 -13.66 15 12 C 0.36 7.12 12.22 -92.21 -1.13 5.99 15 13 N -0.63 -12.89 10.45 -12.65 -0.13 -13.03 15 14 C 0.24 4.82 6.61 -84.85 -0.56 4.26 15 15 C -0.15 -2.51 10.01 -39.55 -0.40 -2.91 15 16 C -0.04 -0.68 9.34 -39.91 -0.37 -1.05 15 17 C -0.25 -4.31 5.35 -104.92 -0.56 -4.87 15 18 C 0.51 8.18 3.30 36.00 0.12 8.29 15 19 F -0.18 -2.71 15.92 2.25 0.04 -2.67 15 20 F -0.18 -3.00 17.22 2.25 0.04 -2.96 15 21 F -0.18 -3.00 17.22 2.25 0.04 -2.96 15 22 C -0.01 -0.21 9.02 -39.62 -0.36 -0.56 15 23 C -0.20 -4.17 5.76 -106.66 -0.61 -4.78 15 24 H 0.29 6.25 8.31 -40.82 -0.34 5.91 15 25 H 0.41 9.14 6.15 -40.82 -0.25 8.89 15 26 H 0.17 2.76 8.06 -52.49 -0.42 2.34 15 27 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 28 H 0.13 1.67 7.10 -52.49 -0.37 1.29 15 29 H 0.12 2.22 6.59 -52.48 -0.35 1.88 15 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -24.92 275.00 -6.95 -31.87 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -1.32 Total: 11.29 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -5.27 Total: 4.92 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.41 Total: -55.97 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.11 Total: -8.59 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.02 Total: 12.34 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -24.92 -6.95 -31.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181890.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.460 kcal (2) G-P(sol) polarization free energy of solvation -24.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds