Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 120.00241 * 2 1 4 4 H 1.48500 * 109.46853 * 239.99899 * 3 2 1 5 5 H 1.48497 * 109.46946 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47166 * 120.00288 * 3 2 1 7 7 C 1.38852 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99640 * 179.97438 * 7 2 1 9 9 N 1.36948 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.38328 * 119.99644 * 180.02562 * 9 7 2 11 11 N 1.33223 * 118.68564 * 359.97066 * 10 9 7 12 12 C 1.31595 * 121.56088 * 180.02562 * 11 10 9 13 13 C 1.40809 * 118.47829 * 359.97438 * 12 11 10 14 14 C 1.40196 * 122.04157 * 180.02562 * 13 12 11 15 15 C 1.36290 * 119.50610 * 179.97438 * 14 13 12 16 16 C 1.39314 * 120.96196 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.46706 * 180.02562 * 16 15 14 18 18 F 1.39904 * 109.46916 * 359.97438 * 17 16 15 19 19 F 1.39901 * 109.46963 * 119.99939 * 17 16 15 20 20 F 1.39894 * 109.47370 * 240.00084 * 17 16 15 21 21 C 1.36248 * 121.07010 * 0.02562 * 16 15 14 22 22 C 1.40292 * 119.58755 * 0.02562 * 21 16 15 23 23 N 1.31934 * 118.67930 * 179.97438 * 10 9 7 24 24 H 0.97005 * 119.99937 * 0.02562 * 1 2 3 25 25 H 0.96989 * 120.00092 * 359.97438 * 9 7 2 26 26 H 1.08004 * 120.76454 * 179.97438 * 12 11 10 27 27 H 1.07994 * 120.24774 * 359.95973 * 14 13 12 28 28 H 1.08002 * 119.51767 * 179.97438 * 15 14 13 29 29 H 1.07992 * 120.20439 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0094 -1.2026 0.0005 8 1 3.0895 -1.2026 0.0001 9 7 1.3246 -2.3885 0.0005 10 6 2.0163 -3.5865 0.0016 11 7 3.3481 -3.5559 0.0020 12 6 4.0625 -4.6611 0.0025 13 6 3.3875 -5.8968 0.0032 14 6 4.0738 -7.1193 0.0043 15 6 3.3682 -8.2853 0.0054 16 6 1.9751 -8.2800 0.0060 17 6 1.2287 -9.5891 0.0079 18 9 2.1437 -10.6475 0.0081 19 9 0.4254 -9.6663 1.1506 20 9 0.4244 -9.6690 -1.1339 21 6 1.2764 -7.1103 0.0050 22 6 1.9685 -5.8900 0.0027 23 7 1.3305 -4.7136 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 0.3547 -2.3885 0.0005 26 1 5.1418 -4.6213 0.0025 27 1 5.1536 -7.1369 0.0040 28 1 3.8968 -9.2271 0.0059 29 1 0.1965 -7.1225 0.0059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -79.906969 kcal Electronic energy + Delta-G solvation = -20950.045531 eV Core-core repulsion = 17037.273375 eV Total energy + Delta-G solvation = -3912.772156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01692 -47.53844 -47.46727 -40.39546 -37.61667 -35.32555 -33.28516 -32.24441 -31.15754 -29.00172 -26.39747 -25.31232 -23.41263 -22.28433 -21.80684 -19.07046 -18.36984 -18.33288 -18.06000 -17.57570 -16.53431 -15.93759 -15.00670 -14.71062 -14.46425 -14.29044 -14.18287 -13.92436 -13.91067 -13.80311 -13.67585 -13.64360 -13.28450 -12.78645 -12.30036 -11.98009 -11.97463 -11.44128 -11.28964 -10.91189 -10.65256 -10.64317 -10.17366 -10.03894 -9.11450 -8.53626 -8.20584 -7.33964 -7.01660 -4.10036 0.78968 1.36731 2.54358 2.82681 2.95447 2.97602 3.00823 3.37688 3.69305 3.89069 4.18890 4.32357 4.45048 4.63069 4.96121 5.06323 5.10265 5.27453 5.38864 5.60699 5.75813 5.94500 6.20530 6.39519 6.47825 6.62921 6.89565 7.01568 7.09389 7.46408 7.96706 8.21665 8.63750 8.86490 9.49257 10.11888 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.003700 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.575608 B = 7566.626527 C = 8136.713169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.279 4.279 8 H 0.123 0.877 9 N -0.469 5.469 10 C 0.469 3.531 11 N -0.528 5.528 12 C 0.219 3.781 13 C -0.252 4.252 14 C -0.025 4.025 15 C -0.180 4.180 16 C -0.125 4.125 17 C 0.506 3.494 18 F -0.180 7.180 19 F -0.179 7.179 20 F -0.179 7.179 21 C -0.092 4.092 22 C 0.240 3.760 23 N -0.616 5.616 24 H 0.286 0.714 25 H 0.416 0.584 26 H 0.163 0.837 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -11.427 0.010 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.411 4.411 8 H 0.141 0.859 9 N -0.073 5.073 10 C 0.115 3.885 11 N -0.244 5.244 12 C 0.028 3.972 13 C -0.263 4.263 14 C -0.046 4.046 15 C -0.202 4.202 16 C -0.130 4.130 17 C 0.452 3.548 18 F -0.161 7.161 19 F -0.161 7.161 20 F -0.161 7.161 21 C -0.113 4.113 22 C 0.101 3.899 23 N -0.348 5.348 24 H 0.096 0.904 25 H 0.254 0.746 26 H 0.180 0.820 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.735 -9.779 0.009 10.865 hybrid contribution 0.131 -0.270 0.000 0.300 sum 4.865 -10.049 0.009 11.165 Atomic orbital electron populations 1.69676 1.06447 1.30149 1.43336 1.25673 0.95932 1.00969 0.95990 0.85609 0.78813 0.78518 0.79737 1.19091 1.20317 1.19084 1.20221 0.94337 0.81323 1.45196 0.85938 1.40819 1.09205 1.01315 1.55990 1.18895 0.84719 0.86317 0.98519 1.67554 1.07707 1.32013 1.17111 1.23166 0.99223 0.86143 0.88664 1.19140 0.95432 0.95697 1.16024 1.20595 0.98983 0.90688 0.94347 1.20098 0.91470 0.99002 1.09598 1.19502 0.95079 0.90823 1.07568 1.18481 0.77296 0.85388 0.73621 1.93134 1.66698 1.60064 1.96240 1.93205 1.74898 1.96782 1.51169 1.93203 1.74850 1.96771 1.51235 1.20128 0.99921 0.89459 1.01841 1.18159 0.89135 0.91421 0.91183 1.68125 1.37929 0.96250 1.32529 0.90375 0.74643 0.82038 0.85478 0.85638 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.41 13.05 55.49 0.72 -20.69 15 2 C 0.02 0.54 5.50 -17.46 -0.10 0.44 15 3 Si 0.95 18.35 29.55 -169.99 -5.02 13.32 15 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 7 C -0.28 -6.87 9.68 -15.04 -0.15 -7.02 15 8 H 0.12 2.97 7.01 -52.48 -0.37 2.60 15 9 N -0.47 -11.61 5.42 -12.79 -0.07 -11.68 15 10 C 0.47 11.12 8.35 -322.69 -2.70 8.42 15 11 N -0.53 -11.41 8.99 -13.49 -0.12 -11.54 15 12 C 0.22 3.79 11.15 -16.68 -0.19 3.61 15 13 C -0.25 -4.40 5.74 -106.79 -0.61 -5.02 15 14 C -0.03 -0.35 9.81 -39.55 -0.39 -0.73 15 15 C -0.18 -2.50 9.34 -39.88 -0.37 -2.87 15 16 C -0.13 -1.93 5.35 -104.94 -0.56 -2.49 15 17 C 0.51 7.13 3.29 36.00 0.12 7.24 15 18 F -0.18 -2.36 15.91 2.25 0.04 -2.32 15 19 F -0.18 -2.58 17.22 2.25 0.04 -2.55 15 20 F -0.18 -2.59 17.22 2.25 0.04 -2.55 15 21 C -0.09 -1.62 9.48 -39.53 -0.37 -2.00 15 22 C 0.24 4.83 6.62 -84.82 -0.56 4.26 15 23 N -0.62 -14.14 10.46 -11.92 -0.12 -14.27 15 24 H 0.29 6.61 8.31 -40.82 -0.34 6.27 15 25 H 0.42 10.47 8.00 -40.82 -0.33 10.14 15 26 H 0.16 2.02 8.06 -52.48 -0.42 1.60 15 27 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.13 1.45 7.10 -52.49 -0.37 1.08 15 29 H 0.13 2.25 8.06 -52.49 -0.42 1.83 15 LS Contribution 278.06 15.07 4.19 4.19 Total: -1.00 -26.44 278.06 -7.66 -34.10 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -1.47 Total: 10.11 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -5.88 Total: 3.86 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.41 Total: -58.17 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.44 -7.66 -34.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.809 kcal (2) G-P(sol) polarization free energy of solvation -26.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds