Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86803 * 119.99904 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99898 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00175 * 3 2 1 7 7 C 1.38934 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99838 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99857 * 0.27463 * 7 2 1 10 10 C 1.37824 * 119.99860 * 179.71969 * 9 7 2 11 11 N 1.32746 * 120.91987 * 359.72754 * 10 9 7 12 12 C 1.32261 * 121.48684 * 179.70410 * 11 10 9 13 13 N 1.31254 * 122.98404 * 0.58902 * 12 11 10 14 14 C 1.34084 * 120.47694 * 359.70623 * 13 12 11 15 15 C 1.41634 * 120.91780 * 179.97438 * 10 9 7 16 16 C 1.39904 * 122.13109 * 0.06043 * 15 10 9 17 17 C 1.36410 * 119.50357 * 179.97438 * 16 15 10 18 18 C 1.39206 * 120.90564 * 359.97438 * 17 16 15 19 19 C 1.36330 * 121.03081 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.20988 * 179.97438 * 19 18 17 21 21 F 1.39893 * 109.47145 * 359.97438 * 20 19 18 22 22 F 1.39904 * 109.47441 * 119.99835 * 20 19 18 23 23 F 1.39904 * 109.46814 * 239.99262 * 20 19 18 24 24 H 0.96996 * 120.00364 * 359.97438 * 1 2 3 25 25 H 0.97000 * 119.99637 * 359.72622 * 9 7 2 26 26 H 1.07994 * 118.51257 * 180.27227 * 12 11 10 27 27 H 1.08003 * 120.24523 * 359.97438 * 16 15 10 28 28 H 1.08008 * 119.55098 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.48616 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.1024 1.6964 -1.2124 5 1 1.2837 2.7464 0.0006 6 1 3.1024 1.6964 1.2125 7 6 2.0094 -1.2032 -0.0005 8 1 3.0894 -1.2031 -0.0010 9 7 1.3252 -2.3882 -0.0067 10 6 2.0144 -3.5818 -0.0131 11 7 3.3417 -3.6030 -0.0188 12 6 4.0144 -4.7417 -0.0191 13 7 3.4299 -5.9169 -0.0252 14 6 2.0923 -6.0112 -0.0257 15 6 1.3260 -4.8195 -0.0191 16 6 -0.0710 -4.8940 -0.0200 17 6 -0.6787 -6.1153 -0.0264 18 6 0.0722 -7.2875 -0.0325 19 6 1.4350 -7.2491 -0.0328 20 6 2.2296 -8.5296 -0.0388 21 9 1.3548 -9.6213 -0.0428 22 9 3.0355 -8.5730 -1.1816 23 9 3.0364 -8.5831 1.1029 24 1 -0.4850 0.8400 0.0004 25 1 0.3552 -2.3882 -0.0068 26 1 5.0936 -4.7029 -0.0193 27 1 -0.6639 -3.9913 -0.0158 28 1 -1.7572 -6.1737 -0.0276 29 1 -0.4327 -8.2422 -0.0370 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182506.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -91.497876 kcal Electronic energy + Delta-G solvation = -21617.399147 eV Core-core repulsion = 17704.124371 eV Total energy + Delta-G solvation = -3913.274776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.55721 -47.13961 -46.92610 -40.36063 -37.15369 -36.21680 -33.31195 -31.51973 -30.97219 -29.37664 -25.67520 -25.54772 -23.45414 -23.01749 -20.80213 -18.99767 -18.54258 -17.86759 -17.69497 -17.61199 -16.63523 -15.49921 -15.11565 -14.78789 -14.32483 -14.27767 -13.96473 -13.84372 -13.68060 -13.45889 -13.16348 -13.15802 -13.08698 -12.50488 -12.22460 -12.12948 -11.75043 -11.55136 -11.19800 -11.12898 -10.99385 -10.74972 -9.78577 -9.67300 -8.86900 -8.72321 -8.04469 -7.39302 -7.27069 -4.31821 0.89693 1.56787 2.52142 2.88477 2.91676 2.96294 3.26209 3.54999 3.59326 4.24609 4.35890 4.40189 4.65928 4.92645 4.99504 5.17233 5.21550 5.33491 5.48974 5.53573 5.79247 6.05683 6.31890 6.41576 6.52998 6.73773 6.78205 6.99523 7.07138 7.53701 7.92455 8.17532 8.56200 8.75240 9.47417 9.84417 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.033468 B = 0.004640 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.417393 B = 6032.920448 C = 6694.837617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.025 3.975 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.269 4.269 8 H 0.130 0.870 9 N -0.460 5.460 10 C 0.344 3.656 11 N -0.611 5.611 12 C 0.364 3.636 13 N -0.630 5.630 14 C 0.253 3.747 15 C -0.195 4.195 16 C -0.039 4.039 17 C -0.189 4.189 18 C -0.027 4.027 19 C -0.226 4.226 20 C 0.527 3.473 21 F -0.193 7.193 22 F -0.176 7.176 23 F -0.176 7.176 24 H 0.291 0.709 25 H 0.411 0.589 26 H 0.175 0.825 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -6.607 -0.024 6.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.402 4.402 8 H 0.148 0.852 9 N -0.058 5.058 10 C 0.091 3.909 11 N -0.343 5.343 12 C 0.072 3.928 13 N -0.359 5.359 14 C 0.123 3.877 15 C -0.204 4.204 16 C -0.061 4.061 17 C -0.210 4.210 18 C -0.047 4.047 19 C -0.232 4.232 20 C 0.473 3.527 21 F -0.175 7.175 22 F -0.157 7.157 23 F -0.157 7.157 24 H 0.101 0.899 25 H 0.249 0.751 26 H 0.192 0.808 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.723 -6.076 -0.030 6.119 hybrid contribution -0.982 0.611 -0.001 1.157 sum -1.705 -5.465 -0.031 5.725 Atomic orbital electron populations 1.69603 1.06684 1.30902 1.41425 1.25824 0.95963 1.01516 0.95166 0.85543 0.78925 0.77836 0.80173 1.18738 1.20155 1.18737 1.20467 0.94988 0.81352 1.43397 0.85219 1.41114 1.09065 1.02952 1.52713 1.18073 0.89122 0.84398 0.99341 1.67782 1.06163 1.30695 1.29630 1.24162 0.99655 0.82446 0.86579 1.68790 1.07721 1.28122 1.31268 1.17968 0.90245 0.90208 0.89262 1.18717 0.94559 0.94212 1.12915 1.20836 0.93029 0.98096 0.94092 1.20383 0.99548 0.91554 1.09526 1.20581 0.91906 0.99223 0.92991 1.19114 0.93966 0.90675 1.19430 1.17901 0.77560 0.83281 0.73950 1.93087 1.69698 1.58251 1.96424 1.93176 1.74829 1.96697 1.51028 1.93176 1.74785 1.96675 1.51093 0.89860 0.75102 0.80827 0.86086 0.85787 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.26 13.05 55.50 0.72 -18.54 15 2 C 0.03 0.56 5.50 -17.45 -0.10 0.46 15 3 Si 0.95 17.29 29.55 -169.99 -5.02 12.26 15 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 5 H -0.28 -4.93 7.11 56.52 0.40 -4.53 15 6 H -0.26 -4.77 7.11 56.52 0.40 -4.37 15 7 C -0.27 -6.23 9.72 -15.06 -0.15 -6.37 15 8 H 0.13 3.05 7.12 -52.49 -0.37 2.68 15 9 N -0.46 -10.29 5.34 -10.73 -0.06 -10.35 15 10 C 0.34 7.72 7.50 -154.90 -1.16 6.56 15 11 N -0.61 -13.75 9.22 -13.53 -0.12 -13.87 15 12 C 0.36 7.49 12.22 -92.21 -1.13 6.37 15 13 N -0.63 -13.52 9.51 -12.65 -0.12 -13.64 15 14 C 0.25 5.32 6.50 -84.85 -0.55 4.77 15 15 C -0.19 -4.04 5.76 -106.66 -0.61 -4.66 15 16 C -0.04 -0.69 9.54 -39.62 -0.38 -1.06 15 17 C -0.19 -2.90 9.96 -39.88 -0.40 -3.30 15 18 C -0.03 -0.42 9.37 -39.91 -0.37 -0.80 15 19 C -0.23 -4.22 5.37 -104.59 -0.56 -4.78 15 20 C 0.53 9.42 3.02 36.01 0.11 9.53 15 21 F -0.19 -3.04 15.95 2.25 0.04 -3.00 15 22 F -0.18 -3.30 17.02 2.25 0.04 -3.26 15 23 F -0.18 -3.30 17.01 2.25 0.04 -3.26 15 24 H 0.29 6.11 8.31 -40.82 -0.34 5.77 15 25 H 0.41 8.79 6.15 -40.82 -0.25 8.54 15 26 H 0.18 2.93 8.06 -52.49 -0.42 2.51 15 27 H 0.12 1.95 6.59 -52.48 -0.35 1.61 15 28 H 0.12 1.49 8.06 -52.48 -0.42 1.07 15 29 H 0.13 1.67 7.10 -52.48 -0.37 1.30 15 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -25.63 273.78 -6.98 -32.61 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -1.32 Total: 10.20 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -5.30 Total: 6.72 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.42 Total: -56.41 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 0.11 Total: -9.52 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.02 Total: 12.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.63 -6.98 -32.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182506.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.883 kcal (2) G-P(sol) polarization free energy of solvation -25.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds