Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48504 * 109.47173 * 269.99328 * 3 2 1 5 5 H 1.48498 * 109.47275 * 29.99652 * 3 2 1 6 6 H 1.48497 * 109.47260 * 149.99685 * 3 2 1 7 7 C 1.38868 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99568 * 180.02562 * 7 2 1 9 9 N 1.36752 * 120.00113 * 0.02562 * 7 2 1 10 10 C 1.38439 * 119.99915 * 184.70820 * 9 7 2 11 11 C 1.38958 * 121.16365 * 270.58712 * 10 9 7 12 12 Cl 1.73607 * 120.17207 * 359.97438 * 11 10 9 13 13 C 1.38963 * 119.64564 * 179.77963 * 11 10 9 14 14 N 1.31321 * 121.95109 * 0.51090 * 13 11 10 15 15 C 1.33526 * 121.59810 * 359.74496 * 14 13 11 16 16 C 1.40748 * 121.76026 * 180.02562 * 15 14 13 17 17 Cl 1.73594 * 120.02192 * 359.97438 * 16 15 14 18 18 N 1.31326 * 119.96330 * 179.97438 * 16 15 14 19 19 C 1.32528 * 122.80114 * 359.97438 * 18 16 15 20 20 C 1.36370 * 121.70472 * 359.97438 * 19 18 16 21 21 C 1.40275 * 118.70183 * 0.02562 * 20 19 18 22 22 H 0.97006 * 120.00128 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99965 * 4.97609 * 9 7 2 24 24 H 1.08001 * 119.02182 * 180.23309 * 13 11 10 25 25 H 1.07998 * 119.14451 * 179.97438 * 19 18 16 26 26 H 1.07998 * 120.65098 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0095 -1.2027 0.0005 8 1 3.0895 -1.2026 0.0010 9 7 1.3258 -2.3870 0.0005 10 6 2.0144 -3.5838 0.0995 11 6 2.4676 -4.2485 -1.0336 12 17 2.1752 -3.5839 -2.6105 13 6 3.1597 -5.4458 -0.8974 14 7 3.3949 -5.9827 0.2777 15 6 2.9841 -5.4014 1.4074 16 6 3.2348 -5.9736 2.6687 17 17 4.0985 -7.4749 2.7852 18 7 2.8149 -5.3711 3.7574 19 6 2.1515 -4.2241 3.7328 20 6 1.8601 -3.5897 2.5613 21 6 2.2773 -4.1746 1.3566 22 1 -0.4850 0.8401 -0.0004 23 1 0.3585 -2.3885 -0.0727 24 1 3.5107 -5.9519 -1.7845 25 1 1.8333 -3.7804 4.6646 26 1 1.3188 -2.6552 2.5611 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182809.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = 49.970571 kcal Electronic energy + Delta-G solvation = -17064.085250 eV Core-core repulsion = 14001.244967 eV Total energy + Delta-G solvation = -3062.840283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 282.997 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28668 -39.39034 -37.77594 -37.48992 -37.13154 -34.24336 -32.66184 -32.04815 -30.51283 -26.69013 -25.43173 -25.29302 -22.86680 -19.93896 -19.57958 -18.84982 -18.70084 -17.09480 -16.54125 -16.33197 -16.10763 -15.61183 -15.35968 -15.09559 -14.58776 -14.32848 -13.62054 -13.22920 -12.89518 -12.82750 -12.82487 -12.33384 -12.30167 -12.08640 -12.05788 -11.38487 -11.29090 -10.98832 -10.75592 -10.12002 -9.49934 -9.28696 -8.08322 -5.49036 -1.02908 -0.54850 0.60036 0.64850 1.13011 1.47086 1.49329 1.56069 1.74761 2.44537 2.81136 2.94371 3.08785 3.26579 3.46645 3.58777 3.71600 3.86466 4.17815 4.35684 4.43050 4.72875 4.99541 5.20619 5.33263 5.46642 6.11435 6.41726 6.61395 7.16516 7.80640 7.94669 9.11383 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.006322 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.808511 B = 4427.634812 C = 5487.577132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.035 4.035 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.675 5.675 10 C 0.265 3.735 11 C -0.116 4.116 12 Cl -0.037 7.037 13 C 0.165 3.835 14 N -0.461 5.461 15 C 0.080 3.920 16 C 0.206 3.794 17 Cl 0.001 6.999 18 N -0.469 5.469 19 C 0.079 3.921 20 C -0.106 4.106 21 C -0.095 4.095 22 H 0.259 0.741 23 H 0.395 0.605 24 H 0.204 0.796 25 H 0.200 0.800 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -10.321 1.692 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.231 4.231 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.313 5.313 10 C 0.158 3.842 11 C -0.149 4.149 12 Cl -0.008 7.008 13 C -0.008 4.008 14 N -0.171 5.171 15 C -0.045 4.045 16 C 0.027 3.973 17 Cl 0.030 6.970 18 N -0.181 5.181 19 C -0.063 4.063 20 C -0.126 4.126 21 C -0.106 4.106 22 H 0.068 0.932 23 H 0.233 0.767 24 H 0.221 0.779 25 H 0.216 0.784 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.673 -11.259 2.635 12.880 hybrid contribution -0.723 2.184 -1.128 2.562 sum 4.949 -9.075 1.508 10.446 Atomic orbital electron populations 1.69712 1.06359 1.26948 1.56360 1.25391 0.96128 1.00462 1.01078 0.85270 0.77934 0.79676 0.77588 1.21313 1.21648 1.19670 1.19099 0.90747 0.83018 1.45300 0.91163 1.39474 1.06254 0.98903 1.86673 1.17802 0.89449 0.87238 0.89724 1.23480 1.04832 0.97937 0.88651 1.98365 1.94626 1.85635 1.22216 1.23369 0.91165 0.89733 0.96512 1.68127 1.19810 1.32026 0.97108 1.19314 0.98857 0.92792 0.93545 1.21767 0.96719 0.91277 0.87567 1.98385 1.73121 1.27237 1.98304 1.66850 1.10287 1.10639 1.30348 1.22592 0.94976 0.89390 0.99391 1.22103 0.98120 1.00875 0.91525 1.19918 0.99239 0.95038 0.96386 0.93160 0.76673 0.77896 0.78379 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.14 13.06 21.66 0.28 -50.85 15 2 C -0.04 -1.78 5.50 84.89 0.47 -1.32 15 3 Si 0.97 41.95 29.55 68.60 2.03 43.98 15 4 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 7 C -0.25 -12.39 9.90 84.08 0.83 -11.56 15 8 H 0.07 3.48 7.83 -2.91 -0.02 3.46 15 9 N -0.67 -30.12 4.06 -183.27 -0.74 -30.87 15 10 C 0.27 10.29 5.92 39.04 0.23 10.52 15 11 C -0.12 -3.91 6.36 22.62 0.14 -3.77 15 12 Cl -0.04 -1.24 28.52 -2.72 -0.08 -1.32 15 13 C 0.17 4.69 10.92 84.94 0.93 5.62 15 14 N -0.46 -14.43 9.86 -188.76 -1.86 -16.29 15 15 C 0.08 2.72 6.62 40.35 0.27 2.98 15 16 C 0.21 6.58 7.37 85.38 0.63 7.21 15 17 Cl 0.00 0.02 28.73 -2.72 -0.08 -0.05 15 18 N -0.47 -14.53 10.28 -186.20 -1.91 -16.44 15 19 C 0.08 2.27 11.08 84.15 0.93 3.20 15 20 C -0.11 -3.54 9.65 22.33 0.22 -3.32 15 21 C -0.10 -3.45 5.76 -21.17 -0.12 -3.57 15 22 H 0.26 13.67 8.31 -92.70 -0.77 12.90 15 23 H 0.40 18.92 8.02 -92.71 -0.74 18.18 15 24 H 0.20 4.10 8.06 -2.91 -0.02 4.08 15 25 H 0.20 4.14 8.06 -2.91 -0.02 4.12 15 26 H 0.15 5.32 7.71 -2.91 -0.02 5.30 15 Total: -1.00 -54.84 272.43 2.67 -52.16 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.51 Total: 13.68 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.52 Total: 6.00 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -4.23 Total: -114.45 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.16 Total: -1.37 kcal Total: -54.84 2.67 -52.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182809.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.133 kcal (2) G-P(sol) polarization free energy of solvation -54.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds