Wall clock time and date at job start Tue Mar 31 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 120.00245 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99945 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00222 * 3 2 1 7 7 C 1.38759 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99880 * 0.27461 * 7 2 1 10 10 C 1.39379 * 120.00150 * 179.72305 * 9 7 2 11 11 C 1.39079 * 120.01644 * 359.72187 * 10 9 7 12 12 C 1.38222 * 119.97674 * 179.77011 * 11 10 9 13 13 F 1.35104 * 119.98636 * 180.25520 * 12 11 10 14 14 C 1.38911 * 120.02229 * 0.50541 * 12 11 10 15 15 O 1.36039 * 119.98391 * 179.72326 * 14 12 11 16 16 C 1.42899 * 117.00236 * 270.02597 * 15 14 12 17 17 F 1.39900 * 109.46873 * 59.99969 * 16 15 14 18 18 F 1.39898 * 109.47400 * 179.97438 * 16 15 14 19 19 F 1.39894 * 109.47225 * 299.99976 * 16 15 14 20 20 C 1.38916 * 120.03626 * 359.75110 * 14 12 11 21 21 F 1.35105 * 119.99196 * 179.97438 * 20 14 12 22 22 C 1.38225 * 120.01889 * 359.97438 * 20 14 12 23 23 H 0.97000 * 119.99214 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99637 * 359.72576 * 9 7 2 25 25 H 1.07992 * 120.00882 * 0.02562 * 11 10 9 26 26 H 1.08002 * 120.00862 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0100 -1.2017 -0.0005 8 1 3.0900 -1.2017 -0.0010 9 7 1.3258 -2.3867 -0.0067 10 6 2.0226 -3.5938 -0.0131 11 6 3.4134 -3.5942 -0.0190 12 6 4.1036 -4.7918 -0.0205 13 9 5.4547 -4.7925 -0.0211 14 6 3.4087 -5.9945 -0.0268 15 8 4.0888 -7.1727 -0.0340 16 6 4.4127 -7.7271 -1.3106 17 9 5.2137 -6.8263 -2.0205 18 9 5.1066 -8.9290 -1.1346 19 9 3.2353 -7.9685 -2.0265 20 6 2.0195 -5.9950 -0.0263 21 9 1.3445 -7.1653 -0.0329 22 6 1.3276 -4.7983 -0.0190 23 1 -0.4849 0.8401 0.0004 24 1 0.3558 -2.3866 -0.0068 25 1 3.9538 -2.6593 -0.0182 26 1 0.2476 -4.7989 -0.0191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183297.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:55 Heat of formation + Delta-G solvation = -267.829337 kcal Electronic energy + Delta-G solvation = -22324.067624 eV Core-core repulsion = 17816.624261 eV Total energy + Delta-G solvation = -4507.443363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.037 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.74110 -48.45684 -48.39381 -47.52798 -47.37746 -38.95969 -37.64841 -34.92372 -32.20030 -29.68541 -28.16762 -25.59765 -24.58325 -22.49219 -21.61747 -19.24162 -18.76117 -18.59418 -18.29003 -17.84162 -16.44287 -15.93424 -15.55945 -15.27693 -15.01669 -14.74204 -14.46628 -14.31324 -14.27593 -14.17051 -13.97509 -13.89250 -13.62116 -13.60511 -13.20868 -12.80781 -12.54167 -12.31982 -11.83485 -11.61152 -11.39107 -10.93901 -10.73587 -10.33900 -10.21334 -9.13926 -8.20276 -7.34506 -7.14868 -4.27367 1.36845 1.79800 2.56470 2.90745 2.91368 2.92752 3.57301 3.63270 3.99328 4.27227 4.58113 4.58943 4.69179 4.80065 5.07644 5.58865 5.79307 5.87592 6.17081 6.50918 6.62312 6.74024 6.87502 6.93572 7.15681 7.66168 8.15806 8.65120 8.86383 9.97879 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.030538 B = 0.004796 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.657865 B = 5836.498400 C = 6433.470142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.030 3.970 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.305 4.305 8 H 0.115 0.885 9 N -0.503 5.503 10 C 0.227 3.773 11 C -0.255 4.255 12 C 0.194 3.806 13 F -0.134 7.134 14 C -0.168 4.168 15 O -0.286 6.286 16 C 0.563 3.437 17 F -0.178 7.178 18 F -0.153 7.153 19 F -0.179 7.179 20 C 0.195 3.805 21 F -0.134 7.134 22 C -0.270 4.270 23 H 0.287 0.713 24 H 0.408 0.592 25 H 0.140 0.860 26 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -5.750 -1.157 6.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.435 4.435 8 H 0.133 0.867 9 N -0.096 5.096 10 C 0.096 3.904 11 C -0.279 4.279 12 C 0.172 3.828 13 F -0.112 7.112 14 C -0.217 4.217 15 O -0.206 6.206 16 C 0.474 3.526 17 F -0.161 7.161 18 F -0.135 7.135 19 F -0.161 7.161 20 C 0.173 3.827 21 F -0.113 7.113 22 C -0.295 4.295 23 H 0.098 0.902 24 H 0.245 0.755 25 H 0.158 0.842 26 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.482 -5.338 -1.045 6.459 hybrid contribution 0.029 0.453 -0.396 0.603 sum 3.512 -4.885 -1.441 6.187 Atomic orbital electron populations 1.69678 1.06403 1.30309 1.43081 1.25590 0.95900 1.00953 0.95380 0.85689 0.79006 0.78726 0.79875 1.18963 1.20174 1.18951 1.20028 0.93905 0.82224 1.47365 0.86732 1.41355 1.09028 1.02420 1.56750 1.16983 0.90461 0.85444 0.97487 1.20167 0.93023 0.96330 1.18387 1.17088 0.76090 0.92472 0.97167 1.91455 1.29018 1.97394 1.93341 1.17326 0.88314 0.82301 1.33767 1.86868 1.74176 1.37571 1.21982 1.21016 0.74784 0.76094 0.80727 1.93232 1.74650 1.68362 1.79825 1.93190 1.79419 1.45467 1.95402 1.93227 1.48911 1.94423 1.79554 1.16950 0.87434 0.80941 0.97385 1.91454 1.80070 1.46346 1.93385 1.19970 0.99665 0.89350 1.20530 0.90249 0.75542 0.84191 0.85160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -19.75 13.05 55.49 0.72 -19.02 15 2 C 0.03 0.66 5.50 -17.45 -0.10 0.56 15 3 Si 0.94 17.06 29.55 -169.99 -5.02 12.03 15 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 7 C -0.31 -6.68 9.55 -15.13 -0.14 -6.83 15 8 H 0.12 2.38 5.68 -52.49 -0.30 2.08 15 9 N -0.50 -10.56 5.44 -9.60 -0.05 -10.61 15 10 C 0.23 4.53 6.62 -83.81 -0.55 3.97 15 11 C -0.25 -5.01 9.28 -39.28 -0.36 -5.37 15 12 C 0.19 3.82 7.02 -39.34 -0.28 3.54 15 13 F -0.13 -2.58 16.76 2.25 0.04 -2.54 15 14 C -0.17 -3.33 5.34 -39.08 -0.21 -3.54 15 15 O -0.29 -5.55 10.02 -19.86 -0.20 -5.74 15 16 C 0.56 9.98 3.80 101.05 0.38 10.36 15 17 F -0.18 -3.19 16.61 2.25 0.04 -3.15 15 18 F -0.15 -2.47 17.53 2.25 0.04 -2.43 15 19 F -0.18 -3.17 16.62 2.25 0.04 -3.14 15 20 C 0.19 3.75 7.02 -39.34 -0.28 3.48 15 21 F -0.13 -2.52 16.76 2.25 0.04 -2.48 15 22 C -0.27 -5.05 9.87 -39.28 -0.39 -5.44 15 23 H 0.29 6.19 8.31 -40.82 -0.34 5.85 15 24 H 0.41 8.53 7.90 -40.82 -0.32 8.21 15 25 H 0.14 2.66 5.95 -52.49 -0.31 2.35 15 26 H 0.13 2.19 8.06 -52.49 -0.42 1.76 15 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -22.64 263.55 -2.80 -25.44 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -0.49 Total: 6.94 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.92 Total: 0.73 kcal Atomic # 7 Polarization: -30.31 SS G_CDS: 0.67 Total: -29.63 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.20 Total: -5.74 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 0.19 Total: -13.74 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.02 Total: 12.03 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -22.64 -2.80 -25.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183297.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -242.389 kcal (2) G-P(sol) polarization free energy of solvation -22.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds